PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g04460.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 330aa    MW: 35521.7 Da    PI: 6.9683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g04460.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-20161210255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  Zjn_sc00007.1.g04460.1.am.mk 161 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 210
                                   59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.22E-32160218No hitNo description
SMARTSM003802.2E-37161224IPR001471AP2/ERF domain
PROSITE profilePS5103223.117161218IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22161218IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-32161219IPR001471AP2/ERF domain
PfamPF008471.8E-13162210IPR001471AP2/ERF domain
PRINTSPR003675.6E-11162173IPR001471AP2/ERF domain
PRINTSPR003675.6E-11184200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAAAIDMYNT SIHQIASASD QELMKALEPF IPSASSSSSS SSPYHYYSSP SSSVTQDSYM  60
PTPSSYTSLS TPPLPSAATT TSSFSQLPPL YSSPYAAPAA PGITRPMGLT HLGPAQIQQI  120
QAQFMLPQQQ QRGLHAAFLG PRAQPMKQSG SSSLGAAQSK LYRGVRQRHW GKWVAEIRLP  180
KNRTRLWLGT FDTAEDAALA YDKAAFRLRG DMARLNFPSL RRGGAHLAGP LHASVDAKLT  240
AIYQSLTSSS KNGSPSSDSA ASPPDSPKCS ASTEEEEESV SVGSPPSPTL APPVPEMAKL  300
DFTEAPWDET EAFHLRKYPS WEIDWDSILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22157218163ATERF1
3gcc_A2e-22157218163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183842.11e-154putative AP2/EREBP transcription factor superfamily protein
TrEMBLA0A3L6RQH81e-155A0A3L6RQH8_PANMI; Ethylene-responsive transcription factor RAP2-4-like
STRINGGRMZM2G029323_P011e-154(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.14e-44ERF family protein