PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g05870.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 69aa    MW: 7835.07 Da    PI: 11.6921
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g05870.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45.1e-301059251
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +i+fsstg+lye++s
  Zjn_sc00007.1.g05870.1.am.mk 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIVFSSTGRLYEFCS 59
                                  8***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.945161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-29263IPR002100Transcription factor, MADS-box
CDDcd002653.37E-37260No hitNo description
PRINTSPR004044.0E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.4E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-303859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGLIVFSS TGRLYEFCST  60
ESVRGQSRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-20161161MEF2C
5f28_B5e-20161161MEF2C
5f28_C5e-20161161MEF2C
5f28_D5e-20161161MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2416441e-57AK241644.1 Oryza sativa Japonica Group cDNA, clone: J065189M04, full insert sequence.
GenBankAP0048881e-57AP004888.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0617A09.
GenBankAP0057511e-57AP005751.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09.
GenBankAP0149581e-57AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY1777021e-57AY177702.1 Oryza sativa (japonica cultivar-group) transcription factor MADS57 mRNA, complete cds.
GenBankCP0126101e-57CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8353721e-57CT835372.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024166975.17e-34MADS-box transcription factor ANR1-like isoform X4
RefseqXP_025878665.13e-34MADS-box transcription factor 57 isoform X3
RefseqXP_026431440.16e-34MADS-box transcription factor 27-like isoform X2
SwissprotQ6Z6W23e-34MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLA0A0E0CR164e-33A0A0E0CR16_9ORYZ; Uncharacterized protein
STRINGOMERI02G29310.16e-33(Oryza meridionalis)
STRINGOPUNC02G29000.18e-33(Oryza punctata)
STRINGSi019880m1e-33(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.13e-34AGAMOUS-like 44
Publications ? help Back to Top
  1. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  4. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]