PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g07890.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 406aa    MW: 45606.5 Da    PI: 6.9073
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g07890.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10210252754
                                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     + Er RR+++N ++  Lr+l P++     +K + a+i+  A+eYI++L
  Zjn_sc00007.1.g07890.1.am.mkhc 210 ATERERREQLNVKYGALRSLFPNP-----TKSDRASIVGDAIEYINEL 252
                                     78**********************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.008203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.43E-11208264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-7209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-7210252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-10210265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.43E-7212257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MILLSLASTM VQILKNRTSE ISPTQLMLIS HLSLIQDHIL SHQIGQGPHN MAMEQQILNY  60
DDASYPHSAY TAANDLLNVL QIHRCSSAPE FPSTQHSLGD PVQNNVNHLD RNNDLSGAVI  120
HESGMMFDDS TLPLGYHATQ SHLLKDLYHS LPQNYGLLTS DDERDGIIGV PGVSRNIFQE  180
IDGRQFDSPT HGKRRQKGGF GKAKGTGNYA TERERREQLN VKYGALRSLF PNPTKSDRAS  240
IVGDAIEYIN ELNRTIKELK ILVEKKRNST DRRKKVKLDD EAADDGDSSS MQPMRDDQND  300
QMHGAIRSSW VQRRSKECEV DVRIVDDEIN IKFTEKKRAN SLLCAAKVLE EFHLELINVV  360
GGTIGDHHIF MFNTKIPKGS SVYACAVAKK LIEVVEMKHQ ALNIFN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953537.20.0transcription factor EAT1
SwissprotQ7X8R01e-170EAT1_ORYSJ; Transcription factor EAT1
TrEMBLK3YY420.0K3YY42_SETIT; Uncharacterized protein
STRINGSi019192m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-52bHLH family protein