PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g08240.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 347aa    MW: 37142.5 Da    PI: 4.7542
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g08240.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.7e-161663148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg WT++Ed +l+ +++++G  +W++ ++  g+ R++k+c++rw +yl
  Zjn_sc00007.1.g08240.1.am.mk 16 RGLWTPQEDMRLIAYIQKHGHANWRALPKQAGLLRCGKSCRLRWINYL 63
                                  788*****************************99************97 PP
2Myb_DNA-binding507e-1669114148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T +E+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l
  Zjn_sc00007.1.g08240.1.am.mk  69 RGNFTVDEEETIIKLHGLLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114
                                   89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-23766IPR009057Homeodomain-like
PROSITE profilePS5129413.9931163IPR017930Myb domain
SuperFamilySSF466891.39E-2913110IPR009057Homeodomain-like
SMARTSM007174.7E-121565IPR001005SANT/Myb domain
PfamPF002491.8E-141663IPR001005SANT/Myb domain
CDDcd001672.53E-101963No hitNo description
PROSITE profilePS5129424.54464118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2567117IPR009057Homeodomain-like
SMARTSM007176.6E-1468116IPR001005SANT/Myb domain
PfamPF002493.9E-1469114IPR001005SANT/Myb domain
CDDcd001671.38E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRGRAPCCD KVGLNRGLWT PQEDMRLIAY IQKHGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTVDEEETI IKLHGLLGNK WSKIAACLPG RTDNEIKNVW NTHLKKKAAQ  120
REQPKAGSTK EDGAAPITSS SASSSTSTAN SSGDVGEQCG TSQEPDAIPP PLETDIDISG  180
MLVDAFPAMA APMPPQSSPC SSSTLTTSST CVGGGGVEDL IELPVIDIEP DIWDIIDGAA  240
DVPDVWGAGH GDATVPCTGA TVSTSEAGEG EASDWWLENL ERELGLCGPP EDSRAQSDLL  300
LADTEGDPVS NYFQNGPAIA ELSDRSHGFF AAAHLRPCQK PRNSRFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-26141172104MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-26141172104C-Myb DNA-Binding Domain
1msf_C6e-26141172104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814304.11e-144myb-related protein Zm1-like
SwissprotP200241e-136MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A2S3GS791e-143A0A2S3GS79_9POAL; Uncharacterized protein
STRINGPavir.Aa01159.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.18e-69myb domain protein 63
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]