PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g09200.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 225aa    MW: 24313.5 Da    PI: 9.3765
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g09200.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41.1e-07107128426
                                     ---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                     ++C++f++ G C++G+rC++ H+
  Zjn_sc00007.1.g09200.1.am.mkhc 107 RPCKYFLA-GDCSFGERCRYPHS 128
                                     79******.***********887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.7182854IPR000571Zinc finger, CCCH-type
SMARTSM003560.12953IPR000571Zinc finger, CCCH-type
SMARTSM003560.001103129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.582103130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6104128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4107129IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-5107128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.8E-11133203IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.63E-10134203IPR017986WD40-repeat-containing domain
SMARTSM003209.0E-6134173IPR001680WD40 repeat
PfamPF004003.6E-6138173IPR001680WD40 repeat
PROSITE profilePS5029412.868141182IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.951141182IPR001680WD40 repeat
PROSITE patternPS006780160174IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDIEADGRFG NKRVHNRLGP GSGGLPSSTN GKVCNYWRQG RCNRFPCPFL HSELPDASAP  60
TKRSAGPGGN VWRNPNVGGR GGGGGHNRWG KGPGGGSSGA SHKPPDRPCK YFLAGDCSFG  120
ERCRYPHSYH ISDSITMLTP LKGHEKVITG IALPAGSDKL YTGSKDGTVR MWDCQTGQCA  180
GVINMGREVG CMIIEGPWLF VGIPDAVKVR WEDFGLEIQR RNQLF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17784GGRGGGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131242.11e-117nucleic acid binding protein
SwissprotQ0DYP51e-110C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A3L6QCM91e-121A0A3L6QCM9_PANMI; Nucleic acid binding protein
STRINGGRMZM2G037200_P021e-117(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.12e-58zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]