PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00007.1.g11420.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 218aa MW: 22698.5 Da PI: 10.3856

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00007.1.g11420.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.3	1.4e-34	54	217	8	126
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasns 85 ++ h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++ssssa+ + Zjn_sc00007.1.g11420.1.sm.mk 54 GKDQHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssAPSTSSSSAHYQ 134 4899******************************************************88888444222233333333322 PP TCP 86 ssg..........................................kaaksaakskksqksaasalnlakesrakararare 124 +++ + +++a++ + +a++lnl + +a a ra+e Zjn_sc00007.1.g11420.1.sm.mk 135 QQQtvlgkrpreesdatvsvaaaasafwaalptsaprsteaswgfSPLEAQATTTYVPMAQAHHLNLIAALSAGAARRAEE 215 222345555666666667777776667777776666666666666444444433333444444566666666777777666 PP TCP 125 rt 126 +t Zjn_sc00007.1.g11420.1.sm.mk 216 ET 217 66 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.8E-30	53	141	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.747	54	108	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MATRDVSTAA AAAAMFHVYQ PLQVPSTAVT AAATDGALVV PATTPGKKKA SQGGKDQHSK 60 VNGRGRRVRM PIVCAARVFQ LTRELGLKSD GQTIEWLLRQ AEPSILAATG SGTTPAVFVS 120 SSAPSTSSSS AHYQQQQTVL GKRPREESDA TVSVAAAASA FWAALPTSAP RSTEASWGFS 180 PLEAQATTTY VPMAQAHHLN LIAALSAGAA RRAEEETR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00655	PBM	Transfer from LOC_Os02g42380	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727699	1e-103	KJ727699.1 Zea mays clone pUT5638 TCP transcription factor (TCP16) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953208.1	1e-85	transcription factor TCP21-like
Swissprot	Q9FMX2	3e-37	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A368PNU6	3e-84	A0A368PNU6_SETIT; Uncharacterized protein
STRING	Sb04g026970.1	2e-84	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	5e-33	TCP family protein