PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g01280.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 414aa    MW: 44872.9 Da    PI: 6.1964
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g01280.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.66.8e-29268321154
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                                     k rlrWt eLHerFveav++L G+ekAtPk +l+lmkv+gLt++hvkSHLQ  R
  Zjn_sc00008.1.g01280.1.am.mkhc 268 KSRLRWTLELHERFVEAVNKLDGPEKATPKGVLKLMKVEGLTIYHVKSHLQVQR 321
                                     68*************************************************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.165265325IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-26266321IPR009057Homeodomain-like
SuperFamilySSF466891.97E-14266322IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-22268322IPR006447Myb domain, plants
PfamPF002498.8E-7270319IPR001005SANT/Myb domain
PfamPF143798.9E-9316344IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MSSRSALAVE QITAPDKTVH ASTATPPLLH KLFDAKLDHQ VLVDDTLSST SQSSNIKTEL  60
MRSSSFSKSL TLNLQKGSPE PDPESPLSHV SHPNFSDPIP SNSSTFCTTL FSSSLANPER  120
SRRIGTLPFL PHPPKCEQQV SAGQSLSSSL LLSRDIGNSL DDTEHSNDLK VLLNLSGDGS  180
DGSYHEENNA LAFAEHMEFQ FLSEQLGIAI TDNEESPRLD DIYDTPPPQL SALPVSSCSN  240
QSIQNPGSPV KVQLNSSRSS SGSVATNKSR LRWTLELHER FVEAVNKLDG PEKATPKGVL  300
KLMKVEGLTI YHVKSHLQVQ RQLQLRIEEH AKYLQKLLEE QQKTGNTSPP KTLSKTQAES  360
PESVSKESGE SEAGNSSPPS SKKRVPDVDM ESNLLAGSKR TKVQVGSGSE GSCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-23268326260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-23268326260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-23268326260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-23268326260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-23268326260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-23268326260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-23268326260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-23268326260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812859.10.0protein PHOSPHATE STARVATION RESPONSE 3
RefseqXP_025812860.10.0protein PHOSPHATE STARVATION RESPONSE 3
RefseqXP_025812862.10.0protein PHOSPHATE STARVATION RESPONSE 3
RefseqXP_025812863.10.0protein PHOSPHATE STARVATION RESPONSE 3
SwissprotQ6YXZ41e-127PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLA0A3L6PFL70.0A0A3L6PFL7_PANMI; Uncharacterized protein
STRINGPavir.J27649.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45263769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.25e-59G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]