PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g03190.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 320aa    MW: 34665 Da    PI: 9.859
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g03190.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.91.1e-333589155
                         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                                    kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  Zjn_sc00008.1.g03190.1.sm.mkhc 35 KPRLRWTAELHDRFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 89
                                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-323292IPR009057Homeodomain-like
PROSITE profilePS5129412.4573292IPR017930Myb domain
SuperFamilySSF466896.63E-173491IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-243590IPR006447Myb domain, plants
PfamPF002491.8E-83787IPR001005SANT/Myb domain
PfamPF143791.3E-23126171IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MFPSNSKKHS TASSNDRPMC VQGDSGGLVL TTDPKPRLRW TAELHDRFVD AVAQLGGPDK  60
ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQQKEFGDHS ALMEMQRNVA SSSGAMARSM  120
SDRSVDVNEA LRIQMEVQRR LHGELEVQKH LQMRVEAQGK YMQSILEKAY QAIGSSEFAT  180
WPSGYKSLGI QAAALDIGGS SSMGFSSLQD LHFYGGSSSS YMDQHQPIMD HTFLTLGESG  240
AGTAAAGSSA SKKGPAASSS NHCSSTSNSS MMWAGGEEQA KNAAATGQQL QMGSSSTSVM  300
DKRVRWRCKA DHVVRRVDGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-183591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-183591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-183591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-183591157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9690501e-162EU969050.1 Zea mays clone 325800 myb family transcription factor-related protein mRNA, complete cds.
GenBankKJ7280541e-162KJ728054.1 Zea mays clone pUT6200 G2-like transcription factor (GLK34) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700824.11e-151myb family transcription factor APL
SwissprotQ9SAK52e-82APL_ARATH; Myb family transcription factor APL
TrEMBLK3XY571e-150K3XY57_SETIT; Uncharacterized protein
STRINGSi006865m1e-151(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25043890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.23e-76G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]