PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g05900.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 404aa    MW: 43843.4 Da    PI: 9.1793
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g05900.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.3e-18183231153
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 
                                   ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  +
  Zjn_sc00008.1.g05900.1.am.mk 183 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAVLM 231
                                   59*******9.**********8.....334*********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.46E-31183242No hitNo description
SuperFamilySSF541717.19E-20184242IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-32184241IPR001471AP2/ERF domain
PfamPF008471.9E-11184228IPR001471AP2/ERF domain
PROSITE profilePS5103221.878184241IPR001471AP2/ERF domain
SMARTSM003809.7E-39184247IPR001471AP2/ERF domain
PRINTSPR003673.6E-10185196IPR001471AP2/ERF domain
PRINTSPR003673.6E-10207223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MPPSVWTPHL VARDWRSAWT SHGLTAQDSQ PPPRPACTFH GRAARAFTAT DPSEQLQQQK  60
VPSAKNSLTH VSEWSRALRS WFGSLRARLQ PSSNIINEVA KGVGEGVYYQ CPGSRGWLCH  120
PLQFTDSAAD PTHLLHFPSS CFPSPPHQDS STVGPAFSVL PWQKICRPCP PAEQRISMVQ  180
SKKKFRGVRQ RHWGSWVSEI RHPLLKRRVW LGTFETAEEA ARAYDEAAVL MSGRNAKTNF  240
PVPRSATGEL APVPAARDSR GGVGSSSAVG GSNTNNLSQI LSAKLRKCCK TPSPSLTCLR  300
LDPEKSHIGV WQKRAGARAD SSWVMTVELN KDAAAAATSS SEEPTLSYGA ATTPTSTSTT  360
TDSPPAMDDE ERIALQMIEE LLGRSGPVDH SHGMLLSGEG SLII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-14183249470ATERF1
3gcc_A1e-14183249470ATERF1
5wx9_A1e-141842411472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438651.11e-109ethylene-responsive transcription factor WIN1
RefseqXP_004965944.11e-109ethylene-responsive transcription factor WIN1
SwissprotQ9XI339e-72WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A1E5W4251e-112A0A1E5W425_9POAL; Ethylene-responsive transcription factor WIN1
STRINGPavir.Db01224.1.p1e-110(Panicum virgatum)
STRINGSi008394m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37173876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.12e-57ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]