PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00008.1.g06040.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

S1Fa-like

Protein Properties

Length: 77aa MW: 8631.12 Da PI: 11.2043

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00008.1.g06040.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	39.7	1e-12	10	42	2	33
S1FA 2 avakvea.kGlnPGlivllvvgglllvflvgny 33 +va++++ kGlnPG+i llvv+++ll+f+vg y Zjn_sc00008.1.g06040.1.sm.mk 10 NVAIEDViKGLNPGMIALLVVASFLLLFFVGKY 42 45566668***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	6.1E-9	16	42	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MTKRWGGANN VAIEDVIKGL NPGMIALLVV ASFLLLFFVG KYNRRRLLLR KRTGLKEAEE 60 GKAEAGHSRQ ESKKPHN

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP42961	3	3