PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00008.1.g09320.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 1487aa MW: 158869 Da PI: 8.4222

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00008.1.g09320.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.7	3.5e-10	412	462	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46 W t E++ll++av+++G+ +W+++a +++ g+t+ +c++r++ Zjn_sc00008.1.g09320.1.am.mk 412 WGTLEELLLACAVTRHGTSSWDSVAMEVQtrsplaarPGLTPHSCRLRFRH 462 9999********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-4	407	465	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-4	408	466	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.22E-5	409	467	IPR009057	Homeodomain-like
CDD	cd00167	0.00165	412	444	No hit	No description
PROSITE profile	PS50090	6.33	412	464	IPR017877	Myb-like domain
Pfam	PF00249	1.6E-8	412	461	IPR001005	SANT/Myb domain
SuperFamily	SSF47370	6.28E-7	628	743	IPR001487	Bromodomain
Pfam	PF00439	2.3E-4	665	728	IPR001487	Bromodomain
Gene3D	G3DSA:1.20.920.10	7.5E-6	665	756	IPR001487	Bromodomain
CDD	cd04369	3.20E-6	667	738	No hit	No description
SuperFamily	SSF52058	5.61E-32	1025	1246	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	1.9E-35	1025	1250	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF08263	7.7E-8	1027	1059	IPR013210	Leucine-rich repeat-containing N-terminal, plant-type
Pfam	PF00560	0.91	1154	1174	IPR001611	Leucine-rich repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:1904659	Biological Process	glucose transmembrane transport
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1487 aa Download sequence Send to blast
MKASIKFRDD DRPLLRAKVP VGVLGLPFLS GLAAGGDAKD LRFDLSTAFA SGPALRLSYR 60 PNDPLQPFAV SVRTGLGPLG SPTRAPFALA AEFNVFSSNT PTFSIHVKPR VGDFALVSSV 120 CSPPPPPDPA SAPAPAPLAI KMTDFTTNGD DQGRDAHRTF SFNGNGFAAN VAAAAGKGGG 180 GVGALLSGMQ LMTRSVLPLW SKASLRFQWG LRVPPEIKAA LADDGYGRKA GNLAISKLPL 240 LVMNKITIEQ MPNAGSQPDA DRKKKKDVPR SGEEQEFSLM KRQLEALNAE SAILRRSIEG 300 LRAEIGSGKG EGWKLPAALA PPQQPFPLKQ DRHYHGNGKE LGNGGLKAAS SDEATEELKK 360 ALEAGRKGKG FIQEENLALQ LEEQARGMGD GSDGTDMSPE SEAAAEKGGE IWGTLEELLL 420 ACAVTRHGTS SWDSVAMEVQ TRSPLAARPG LTPHSCRLRF RHLHRRFSNV GGAGEEEVGD 480 GNGDDPDASA AEGWVDELRR LRVAELRRDV ERCDLSIGTL QSKVKRLREE RARSLSGAAK 540 PDAASGNDRL SGEEPGRSCR ESNSTDLKPP KHPGAVKEEE VAKQEASGES AAVSKESSEV 600 RSTASLCRRR RSSGKTSGNE EEEAASTPRP LPAQSTPPSA LLDAVAAKLG PVMERLREHE 660 SEEGAAYRGM IRRHVDLETV RTKLEATTAS RADDDDCYPA SEFYRDLLLL CTNAVVFFPR 720 SEPEHAAAVE ARGLVSEHAS TVLREPKQEH VAAAVPVPAP GPAPAGGDIV GPLIEKVKPL 780 IFCRKRSSIA KAAAMKKEIA EKAEPEKEHA ESEEEKEAVA AGPREKAWGL RTKKRGGAVR 840 RLAGTRLTDD AATTDGAKKG APGAGAAAAA EPRLVADEEE RVAAGDDTEA IGVEGSDGRA 900 AKDPEERNWP DGRYRTWGWH QEGRQGWRSQ EGRRTAVETG RCSIDSAAVQ EGEDEQIGQA 960 GDGKAWREEV SRMTMVEAEL DRRPAKAKAK ANAMSSRSSK PLSCSLLPLL LLCTVNTAPS 1020 SATDCDPNDR EALLRVKAQL GDPVRLSSWQ PSTNCCAWEP AVFCNAAGRV TGLALYALDE 1080 LRAPVPPALG ELTELEILQV DSVPGLSGPI PASFGNLTRL RDLDINGTSI SGPVPGFLSK 1140 LVGPIPPSLA ALPSLRYLDL SGNMLTGAIP PGLLHGSSSN VDTVDLSRNQ LTGDPSPFLF 1200 GITKPAVKID LSWNELRFDM TEVSFPHHLR FLDLSHNRIA GSVAKSLLDV KLEHFDVPAG 1260 RFMAVHGPDC YAQNRCLCGT PLPPCDTGIR APSRHEAATR FTLLRIAALV TRVYQCRPFP 1320 SSAMQPLVAT DESLPGAHAS ARVVPPSTAP TRTCALAAWQ PPPPPTPPPR TWRAWWRTTA 1380 TSGGKPSEIT SAPACLGTRP PAGNGACPTR RPGWGKRMRR SAGGVRRTPA GRPQPPAVFL 1440 SFPCAGRERR PRLPFQGSST RPHRLFSRVL GSFGSSAGTV WSTKTLE

Sequence ? help Back to Top

Protein Sequence Length: 1487 aa Download sequence Send to blast

MKASIKFRDD DRPLLRAKVP VGVLGLPFLS GLAAGGDAKD LRFDLSTAFA SGPALRLSYR  60
PNDPLQPFAV SVRTGLGPLG SPTRAPFALA AEFNVFSSNT PTFSIHVKPR VGDFALVSSV  120
CSPPPPPDPA SAPAPAPLAI KMTDFTTNGD DQGRDAHRTF SFNGNGFAAN VAAAAGKGGG  180
GVGALLSGMQ LMTRSVLPLW SKASLRFQWG LRVPPEIKAA LADDGYGRKA GNLAISKLPL  240
LVMNKITIEQ MPNAGSQPDA DRKKKKDVPR SGEEQEFSLM KRQLEALNAE SAILRRSIEG  300
LRAEIGSGKG EGWKLPAALA PPQQPFPLKQ DRHYHGNGKE LGNGGLKAAS SDEATEELKK  360
ALEAGRKGKG FIQEENLALQ LEEQARGMGD GSDGTDMSPE SEAAAEKGGE IWGTLEELLL  420
ACAVTRHGTS SWDSVAMEVQ TRSPLAARPG LTPHSCRLRF RHLHRRFSNV GGAGEEEVGD  480
GNGDDPDASA AEGWVDELRR LRVAELRRDV ERCDLSIGTL QSKVKRLREE RARSLSGAAK  540
PDAASGNDRL SGEEPGRSCR ESNSTDLKPP KHPGAVKEEE VAKQEASGES AAVSKESSEV  600
RSTASLCRRR RSSGKTSGNE EEEAASTPRP LPAQSTPPSA LLDAVAAKLG PVMERLREHE  660
SEEGAAYRGM IRRHVDLETV RTKLEATTAS RADDDDCYPA SEFYRDLLLL CTNAVVFFPR  720
SEPEHAAAVE ARGLVSEHAS TVLREPKQEH VAAAVPVPAP GPAPAGGDIV GPLIEKVKPL  780
IFCRKRSSIA KAAAMKKEIA EKAEPEKEHA ESEEEKEAVA AGPREKAWGL RTKKRGGAVR  840
RLAGTRLTDD AATTDGAKKG APGAGAAAAA EPRLVADEEE RVAAGDDTEA IGVEGSDGRA  900
AKDPEERNWP DGRYRTWGWH QEGRQGWRSQ EGRRTAVETG RCSIDSAAVQ EGEDEQIGQA  960
GDGKAWREEV SRMTMVEAEL DRRPAKAKAK ANAMSSRSSK PLSCSLLPLL LLCTVNTAPS  1020
SATDCDPNDR EALLRVKAQL GDPVRLSSWQ PSTNCCAWEP AVFCNAAGRV TGLALYALDE  1080
LRAPVPPALG ELTELEILQV DSVPGLSGPI PASFGNLTRL RDLDINGTSI SGPVPGFLSK  1140
LVGPIPPSLA ALPSLRYLDL SGNMLTGAIP PGLLHGSSSN VDTVDLSRNQ LTGDPSPFLF  1200
GITKPAVKID LSWNELRFDM TEVSFPHHLR FLDLSHNRIA GSVAKSLLDV KLEHFDVPAG  1260
RFMAVHGPDC YAQNRCLCGT PLPPCDTGIR APSRHEAATR FTLLRIAALV TRVYQCRPFP  1320
SSAMQPLVAT DESLPGAHAS ARVVPPSTAP TRTCALAAWQ PPPPPTPPPR TWRAWWRTTA  1380
TSGGKPSEIT SAPACLGTRP PAGNGACPTR RPGWGKRMRR SAGGVRRTPA GRPQPPAVFL  1440
SFPCAGRERR PRLPFQGSST RPHRLFSRVL GSFGSSAGTV WSTKTLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ogq_A	2e-46	1025	1285	3	312	POLYGALACTURONASE INHIBITING PROTEIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	266	RKKKKD

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4217	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	1e-13	DNA-binding bromodomain-containing protein