PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g09890.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 374aa    MW: 41200.3 Da    PI: 9.1768
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g09890.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-18111164356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k++++++eq+e Le  F++++++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  Zjn_sc00008.1.g09890.1.am.mk 111 KKRRLSDEQVEMLELSFREEQKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 164
                                   45589***********************************************99 PP
2HD-ZIP_I/II114.85.4e-37111201292
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                   kkrrls+eqv++LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da   ++++Le+
  Zjn_sc00008.1.g09890.1.am.mk 111 KKRRLSDEQVEMLELSFREEQKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDAAILHKCHLEN 191
                                   9******************************************************************************** PP

                   HD-ZIP_I/II  83 eveeLreelk 92 
                                   ev +L+e+l 
  Zjn_sc00008.1.g09890.1.am.mk 192 EVLRLKERLV 201
                                   ******9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.342106166IPR001356Homeobox domain
SuperFamilySSF466891.75E-16109165IPR009057Homeodomain-like
SMARTSM003892.4E-17109170IPR001356Homeobox domain
PfamPF000467.4E-16111164IPR001356Homeobox domain
CDDcd000861.94E-15111166No hitNo description
Gene3DG3DSA:1.10.10.604.5E-18111164IPR009057Homeodomain-like
PRINTSPR000312.5E-5137146IPR000047Helix-turn-helix motif
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
PRINTSPR000312.5E-5146162IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MHGPARKAIT YPATRPASAT GVGRARERRQ SMEQYDELQH QLFPSTFVDM DSSLLAANGT  60
YAARRLGVIF NKRLACVAQG EERPRARRRR RRAARCSGAE AGGEVDAGDP KKRRLSDEQV  120
EMLELSFREE QKLETGRKVH LAAELGLDPK QVAVWFQNRR ARHKSKLLEE EFAKLKQAHD  180
AAILHKCHLE NEVLRLKERL VVAEEELARL RSAGSHAVSG GDGGDVMGRI VGSGSPSSSF  240
STGICHQQAG VGSVVDQLGD DDLIYVPDVA DYAYADSSVV EWFSLYGLIG HLCYQRAGIG  300
TELAAERCHS PSNTRVRAHG DLAISGYRAR PGRSTHLIWE RRRTIERMND RAAGTAPNSI  360
TTVDEATRVH AATG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18291RPRARRRRRR
28694RRRRRRAAR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460922.11e-90homeobox-leucine zipper protein HOX14
TrEMBLA0A1E5VQE42e-91A0A1E5VQE4_9POAL; Homeobox-leucine zipper protein HOX14
STRINGPavir.J09638.1.p2e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.17e-39homeobox protein 40