PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g10410.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family YABBY
Protein Properties Length: 177aa    MW: 19295 Da    PI: 4.685
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g10410.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY50.21.1e-151566653
                         YABBY  6 sseqvCyvqCnfCntilavsvPsts....lfkvvtvrCGhCtsllsvnlaka 53
                                   seq+ yvqC+fC+til+vsvPs s    l k+v+v+CG C+ +lsv+l  +
  Zjn_sc00008.1.g10410.1.sm.mk 15 LSEQLGYVQCSFCTTILLVSVPSYSdalqLTKTVAVQCGNCAGVLSVTLPPQ 66
                                  689*******************9875555789***************99765 PP
2YABBY58.13.8e-18105170108159
                         YABBY 108 evprvppvirPPekrqrvPsaynrfik..............eeiqrikasnPdishreafsaaakn 159
                                       v pv++PP +rqr Psayn+fik              eei+rik ++P+ish++afsaa+kn
  Zjn_sc00008.1.g10410.1.sm.mk 105 AEDVVFPVNKPPVRRQRTPSAYNCFIKwvcgisnvvqnvirEEIRRIKEKDPSISHKQAFSAASKN 170
                                   2334679******************87777777777777779***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.9E-2216131IPR006780YABBY protein
PfamPF046903.3E-9142170IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSSSPECSPC LGILLSEQLG YVQCSFCTTI LLVSVPSYSD ALQLTKTVAV QCGNCAGVLS  60
VTLPPQTPTP VVELRLPLQE PGVDPPPRES EDESSGEDRE LEAEAEDVVF PVNKPPVRRQ  120
RTPSAYNCFI KWVCGISNVV QNVIREEIRR IKEKDPSISH KQAFSAASKN LFGATAY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958092.11e-58protein YABBY 7
SwissprotA2PZN87e-35YAB7_ORYSJ; Protein YABBY 7
TrEMBLA0A368Q7492e-58A0A368Q749_SETIT; Uncharacterized protein
STRINGPavir.Ba00601.1.p2e-56(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136252831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.12e-20YABBY family protein