PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g00260.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 384aa    MW: 41658.6 Da    PI: 7.2137
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g00260.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.5e-31167223258
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                                   +Dgy+WrKYGqK++k+s++prsYYrCt ++C++kk+ver+ ++p+++ +tYeg H h
  Zjn_sc00009.1.g00260.1.am.mk 167 EDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERAMDEPDTLLVTYEGLHLH 223
                                   8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.383161226IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-28162224IPR003657WRKY domain
SuperFamilySSF1182909.42E-26164224IPR003657WRKY domain
SMARTSM007747.1E-35166225IPR003657WRKY domain
PfamPF031061.0E-24167223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MPAIYRPAGE TPDGWMGSLN QHLRRTAPCC AVHAFRPRMQ QMSSVIDRDR PITHACVQVG  60
QVNPLSYPLA GLLPPDPFDL VEHDEETEGP RRRRETSMVN KLISTVYSGP TISDIESALS  120
FTGGAGDHQL AVKYSSSPVV FSSEKVLSKM ENKYTLKIKT CGNGLAEDGY KWRKYGQKSI  180
KNSPNPRSYY RCTNPRCNAK KQVERAMDEP DTLLVTYEGL HLHYTYSHFL HSAQVQHQQG  240
LPKKPKRGPA NRSSLLLSSD HDEVLDTNTA PAASNGGGAG DAAVLPGVSV SASAASAAWS  300
CFDGGDEEQQ HHHHMEADMA NKNGGLLEDV VPLLVRRPCG STTTTTTGTG GSSQDNSPPS  360
PSASSVPWTP TSPYIDMAIL SNIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-191652231674Probable WRKY transcription factor 4
2lex_A4e-191652231674Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0332404e-92BT033240.1 Zea mays full-length cDNA clone ZM_BFb0071M13 mRNA, complete cds.
GenBankBT0624334e-92BT062433.1 Zea mays full-length cDNA clone ZM_BFb0296J15 mRNA, complete cds.
GenBankKJ7275734e-92KJ727573.1 Zea mays clone pUT5433 WRKY transcription factor (WRKY120) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198801.12e-92probable WRKY transcription factor 48
TrEMBLA0A3B6EVB42e-97A0A3B6EVB4_WHEAT; Uncharacterized protein
TrEMBLA0A446P7772e-97A0A446P777_TRITD; Uncharacterized protein
STRINGAC165171.2_FGP0026e-91(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.17e-46WRKY DNA-binding protein 49