PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g01160.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 113aa MW: 13070 Da PI: 9.919

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g01160.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	124	1.8e-38	1	108	267	374
GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 lfd+le+ ++r s er+ vEr +lg+ei+n+vac gaerrerhe+l +W +r+e aGF+ vpls++a qa++ + + d Zjn_sc00009.1.g01160.1.am.mk 1 LFDCLEVVAARGSVERARVERWMLGEEIKNIVACDGAERRERHERLDRWARRMEGAGFGRVPLSYYALLQARRAAQGLGCD 81 7****************************************************************************** PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374 g++v e +gs++l+W+dr+++svSaWr Zjn_sc00009.1.g01160.1.am.mk 82 GFKVREAKGSFFLCWQDRAIFSVSAWR 108 ************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	16.664	1	88	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.2E-36	1	108	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
LFDCLEVVAA RGSVERARVE RWMLGEEIKN IVACDGAERR ERHERLDRWA RRMEGAGFGR 60 VPLSYYALLQ ARRAAQGLGC DGFKVREAKG SFFLCWQDRA IFSVSAWRGR RFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-15	1	108	265	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK287540	1e-128	AK287540.1 Oryza sativa Japonica Group cDNA, clone: J065011K01, full insert sequence.
GenBank	AP003259	1e-128	AP003259.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466H10.
GenBank	AP014957	1e-128	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971220.1	6e-71	scarecrow-like protein 3
Refseq	XP_022682001.1	6e-71	scarecrow-like protein 3
Swissprot	Q9LPR8	3e-45	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A287MKE6	8e-71	A0A287MKE6_HORVV; Uncharacterized protein
TrEMBL	A0A368RFP6	1e-69	A0A368RFP6_SETIT; Uncharacterized protein
TrEMBL	A0A453GM99	8e-71	A0A453GM99_AEGTS; Uncharacterized protein
TrEMBL	K3XHR4	2e-70	K3XHR4_SETIT; Uncharacterized protein
STRING	Si001436m	3e-71	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	8e-37	scarecrow-like 3

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]