PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g01520.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 264aa    MW: 27918.1 Da    PI: 7.4385
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g01520.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB172.35.3e-5491186297
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyvep
  Zjn_sc00009.1.g01520.1.am.mk  91 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCRKEKRKTVNGDDVCWAFGALGFDDYVEP 171
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkkyrelegek 97 
                                   ++ yl+++re+eg++
  Zjn_sc00009.1.g01520.1.am.mk 172 MRRYLHRFREVEGDR 186
                                   *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.8E-5086196IPR009072Histone-fold
SuperFamilySSF471136.13E-3893201IPR009072Histone-fold
PfamPF008082.0E-2696159IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.4E-16124142No hitNo description
PROSITE patternPS006850127143IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.4E-16143161No hitNo description
PRINTSPR006155.4E-16162180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEPGIKEGTR GRASSAADSM SSSSGRAGGP CSRGEGESID RLAAEPATCQ LPIGTKAREQ  60
EAVQLARMAD HLGQPDDDGR RPAGSAAEEI KEQDRLLPIA NVGRIMKQIL PPNAKISKEA  120
KETMQECVSE FISFVTGEAS DKCRKEKRKT VNGDDVCWAF GALGFDDYVE PMRRYLHRFR  180
EVEGDRAAAA ASSRGAGEGP DHHASGSGAG GAGPSGTGHF MFGAMDSSRQ CRAPRASITP  240
APPREKKTAS LATPASCVHM WSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A5e-4390181697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701981e-133EU970198.1 Zea mays clone 342117 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635864.16e-73nuclear transcription factor Y subunit B-1
RefseqXP_015635872.16e-73nuclear transcription factor Y subunit B-1
TrEMBLA0A0E0JTD01e-73A0A0E0JTD0_ORYPU; Uncharacterized protein
STRINGOPUNC01G42180.19e-73(Oryza punctata)
STRINGOPUNC01G42210.12e-74(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-56nuclear factor Y, subunit B5