PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g01550.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 751aa MW: 81131.6 Da PI: 8.0355

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g01550.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Zjn_sc00009.1.g01550.1.am.mk 85 FVCEICHKGFQRDQNLQLHRRGH 107 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.31E-6	84	107	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-4	84	107	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.046	85	107	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.637	85	107	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	87	107	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	135	165	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.4E-4	158	190	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.31E-6	165	190	No hit	No description
SuperFamily	SSF53474	1.96E-36	486	748	IPR029058	Alpha/Beta hydrolase fold
Gene3D	G3DSA:3.40.50.1820	2.6E-59	490	750	IPR029058	Alpha/Beta hydrolase fold
Pfam	PF12697	3.7E-17	493	741	IPR000073	Alpha/beta hydrolase fold-1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence Send to blast
MSAAEEELLQ QRRYRAIKPF MGSPPPPGMG NDDDGDLQRV TAGTSEPPPA GPPAAKKKRS 60 LPGTPDPTAE VIALSPKTLM ATNRFVCEIC HKGFQRDQNL QLHRRGHNLP WKLRQRGGGG 120 GGGADGGGPP RKRVYVCPEP SCVHHNPARA LGDLTGIKKH YCRKHGEKKW KCERCAKRYA 180 VQSDWKAHAK VCGTREYKCD CGTVFSRLMN KLRARTADRF DDSCTLVPKG KGHVPVSPRP 240 HLGRDSFVTH RAFCDALAQE NNKLAQPMNM ATVASALQGQ AALPPSTLQA NDDVLDAAED 300 DFDGMMDTKS PQVRMLPISD DPPLIPPPLG MAGCMLSSLA ARSVTAPAFS FSGNSRINNM 360 MGLDMPHSDP GVGFSSASMS ATALLQKAAE LGATTSVGFG PMFGGGPDRV PPMSPFGPPL 420 PAQTQLVGQQ YRGGSMTRAI GSLMHGGLQQ GVDHRRQDDD DDKRVVDDRS FSGVGPFGSS 480 PMDGGKKKHH HFVLVHGVCH GAWCWYKVAT ILESAGHRVT ALDMAGCGVS AVRVEEVRSF 540 DEYSRPLLDA VAAAPPGEKV VLVGHSFGGH SLALAMQRHL EKVAVALFVS AAVPFVGRPM 600 SLFLEQFLHE VRAFSDVLSM GTFGIAERDS EDPVETFLLG PEWMSQRMYQ LSPPEDLKLA 660 TMLVRPSQLF LKDGTMTGER VLTEDGYGAV SRVLVVTEED KTWPAEDQRR VAASCGPGVE 720 VRAIEGSDHM PRFSKPAVLA QLIMEVADKY A

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence Send to blast

MSAAEEELLQ QRRYRAIKPF MGSPPPPGMG NDDDGDLQRV TAGTSEPPPA GPPAAKKKRS  60
LPGTPDPTAE VIALSPKTLM ATNRFVCEIC HKGFQRDQNL QLHRRGHNLP WKLRQRGGGG  120
GGGADGGGPP RKRVYVCPEP SCVHHNPARA LGDLTGIKKH YCRKHGEKKW KCERCAKRYA  180
VQSDWKAHAK VCGTREYKCD CGTVFSRLMN KLRARTADRF DDSCTLVPKG KGHVPVSPRP  240
HLGRDSFVTH RAFCDALAQE NNKLAQPMNM ATVASALQGQ AALPPSTLQA NDDVLDAAED  300
DFDGMMDTKS PQVRMLPISD DPPLIPPPLG MAGCMLSSLA ARSVTAPAFS FSGNSRINNM  360
MGLDMPHSDP GVGFSSASMS ATALLQKAAE LGATTSVGFG PMFGGGPDRV PPMSPFGPPL  420
PAQTQLVGQQ YRGGSMTRAI GSLMHGGLQQ GVDHRRQDDD DDKRVVDDRS FSGVGPFGSS  480
PMDGGKKKHH HFVLVHGVCH GAWCWYKVAT ILESAGHRVT ALDMAGCGVS AVRVEEVRSF  540
DEYSRPLLDA VAAAPPGEKV VLVGHSFGGH SLALAMQRHL EKVAVALFVS AAVPFVGRPM  600
SLFLEQFLHE VRAFSDVLSM GTFGIAERDS EDPVETFLLG PEWMSQRMYQ LSPPEDLKLA  660
TMLVRPSQLF LKDGTMTGER VLTEDGYGAV SRVLVVTEED KTWPAEDQRR VAASCGPGVE  720
VRAIEGSDHM PRFSKPAVLA QLIMEVADKY A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2wfl_A	2e-60	487	748	8	263	POLYNEURIDINE-ALDEHYDE ESTERASE
2wfl_B	2e-60	487	748	8	263	POLYNEURIDINE-ALDEHYDE ESTERASE
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT066652	0.0	BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817951.1	1e-168	protein indeterminate-domain 2-like
TrEMBL	A0A0E0JTD1	0.0	A0A0E0JTD1_ORYPU; Uncharacterized protein
STRING	OPUNC01G42220.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12554	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	2e-91	C2H2 family protein