PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g02110.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 227aa MW: 24873 Da PI: 8.4049

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g02110.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.5	3.3e-33	21	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lp GfrF+Ptdeel+ +yL++k+ + +l++ ++i+ +d+ +++PwdL ++e +fF+ ++++ +r ra+ Zjn_sc00009.1.g02110.1.sm.mkhc 21 LPIGFRFRPTDEELLLHYLRRKALACPLPA-DIIPVADLARLHPWDLV-PPGDADEERFFFHLPETRHW--RRGGRAAG 95 699*************************.99**********4.34456789999999988765..6999 PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+W+a+gk+k v+s ++ vg k+tLvf ++ g++tdWvmheyrl Zjn_sc00009.1.g02110.1.sm.mkhc 96 TGVWRASGKEKLVVSPrCKRPVGAKRTLVFC---HQGGKRTDWVMHEYRL 142 **********9877889*****9...678899******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-41	17	178	IPR003441	NAC domain
PROSITE profile	PS51005	40.824	21	179	IPR003441	NAC domain
Pfam	PF02365	2.8E-21	22	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MEARQPRQAG GGGGRVGLAG LPIGFRFRPT DEELLLHYLR RKALACPLPA DIIPVADLAR 60 LHPWDLVPPG DADEERFFFH LPETRHWRRG GRAAGTGVWR ASGKEKLVVS PRCKRPVGAK 120 RTLVFCHQGG KRTDWVMHEY RLLPAGLLVH NPSSGPHVTS CHGAAAGAED WVVCRIFKRT 180 KPGNGGRGRE EEVEEIPSSP SSCVTDNSSH SDHEEEGEQS SSGDSRV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-26	21	179	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-26	21	179	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-26	21	179	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-26	21	179	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-26	21	179	20	168	NAC domain-containing protein 19
3swm_B	1e-26	21	179	20	168	NAC domain-containing protein 19
3swm_C	1e-26	21	179	20	168	NAC domain-containing protein 19
3swm_D	1e-26	21	179	20	168	NAC domain-containing protein 19
3swp_A	1e-26	21	179	20	168	NAC domain-containing protein 19
3swp_B	1e-26	21	179	20	168	NAC domain-containing protein 19
3swp_C	1e-26	21	179	20	168	NAC domain-containing protein 19
3swp_D	1e-26	21	179	20	168	NAC domain-containing protein 19
4dul_A	1e-26	21	179	17	165	NAC domain-containing protein 19
4dul_B	1e-26	21	179	17	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094930	2e-92	FP094930.1 Phyllostachys edulis cDNA clone: bphylf042n13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184279.1	4e-79	NAC domain-containing protein 83-like
TrEMBL	A0A0A9GFU0	5e-83	A0A0A9GFU0_ARUDO; Uncharacterized protein
STRING	Pavir.Eb03721.1.p	2e-81	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8233	30	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	7e-39	NAC domain containing protein 83