PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g03510.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 227aa MW: 24365.2 Da PI: 6.2378

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g03510.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	24.8	2.5e-08	153	207	1	55
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 lv+lL++cAeav+ +d ++a alL +l+ a +g+++qR+a ++ ++ +++ Zjn_sc00009.1.g03510.1.am.mk 153 LVQLLVACAEAVACRDRAQAAALLRELQASAPVHGTAFQRVARTGLKTRHHCISD 207 689***************************************9877766666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	8.7E-6	153	207	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MGASEQLCNS TANSFSSSYV YSEQNLHLAP QDASPFSDHG LGFPSYYGCT DQSEVPFDGD 60 EVNLGFRASK ATRVDYISSP YGHPPMVRAD LASESSRVRK KRYWDLLESC KQKVEAMEAM 120 ESPVLADQES PDGFGMADGG VTRGGGGADG MRLVQLLVAC AEAVACRDRA QAAALLRELQ 180 ASAPVHGTAF QRVARTGLKT RHHCISDSVC SAPRAGEAMR PRKAPDT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK367029	2e-43	AK367029.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2050E06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814052.1	3e-60	DELLA protein RGL1-like
TrEMBL	A0A2T7DCV4	5e-59	A0A2T7DCV4_9POAL; Uncharacterized protein
STRING	Si000959m	2e-59	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5640	33	54