PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g03640.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 207aa MW: 22549.1 Da PI: 6.1117

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g03640.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7e-13	154	199	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + +e+L AveYIk+Lq Zjn_sc00009.1.g03640.1.sm.mkhc 154 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSEMLDIAVEYIKELQ 199 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.392	148	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-15	151	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.12E-13	152	203	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.7E-14	153	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-10	154	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-13	154	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MGSYSHAGTD AMAHGHTRRL SSQWSFSRQD LPQISEMGMI PDNIGESIVA GGAACNSSSD 60 GGGAQSSSYL SRNFSVSSWD DANSIMFSSS PSKKVQLVGA ADDVVTGFGS IDSQFGLSNS 120 SLEMSGMDDY LQLQQDSVAC RVRAKRGCAT HPRSIAERER RTRISKRLKK LQDLVPNMDK 180 QTNTSEMLDI AVEYIKELQG QVEFLCY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814593.1	1e-117	transcription factor bHLH128-like
TrEMBL	A0A0A9FRS8	1e-118	A0A0A9FRS8_ARUDO; Uncharacterized protein
STRING	Pavir.J01306.1.p	1e-114	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7071	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	2e-44	bHLH family protein