PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g04230.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 270aa    MW: 29904 Da    PI: 10.7024
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g04230.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-16140189255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   gy+GVr+++ +g+Wv+eIr+p +   r r +lg++ t+e Aa a++ a   l+g
  Zjn_sc00009.1.g04230.1.am.mk 140 GYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVFFLRG 189
                                   8*****777.**********943...5*********************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.5E-22140203IPR001471AP2/ERF domain
PfamPF008476.9E-9140189IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-16140192IPR016177DNA-binding domain
PROSITE profilePS5103219.19140200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-23140192IPR001471AP2/ERF domain
PRINTSPR003671.7E-8141152IPR001471AP2/ERF domain
PRINTSPR003671.7E-8163179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
LPWCLATLCR EEETRKRPQA YLHHAHTVVK HTIFDYLKIL TPLLPDRLPI CLPAAVQEFS  60
PQHSRLLFLE VKAPDQFGAK VNELLGRVDL RSRHSIEHQQ VGATCLSSED RNHQLDRTPG  120
RRTMRRATGS GEAPAGERRG YRGVRRRRWG KWVSEIRVPG TRERLWLGSY ATPEAAAVAH  180
DTAVFFLRGG GATGGGGDLV AAQDSAAAPP PPGPEAWLAH RHASVGIARD AGASARPHDQ  240
HAVVNSSSKS VLTVHALKQQ FLYCRRPFLR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9545307e-53EU954530.1 Zea mays clone 1469452 transcriptional factor TINY mRNA, complete cds.
GenBankKJ7276767e-53KJ727676.1 Zea mays clone pUT5603 AP2-EREBP transcription factor (EREB63) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6220522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.11e-14DREB and EAR motif protein 3