PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g05590.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 253aa MW: 28004.5 Da PI: 8.3333

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g05590.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.9	2.7e-42	6	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkr 73 +ppG+rF Pt+eel+++yL++k++g + ++e+vi+ +++y+v+Pw+L++ ++e + w+fF++r++ +a+g r Zjn_sc00009.1.g05590.1.sm.mkhc 6 VPPGYRFYPTEEELICFYLRNKLDGLRGDIERVIPVFEVYTVDPWQLKEiherlcGGAGEGEPWFFFCPRQEGEARGGR 84 69**************************99***********8545655422236779************ PP NAM 74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++r+t +gyWka g+ +v++++++++g++kt+vfy+grap+g+kt+W m+eyr+ Zjn_sc00009.1.g05590.1.sm.mkhc 85 PSRVTPTGYWKAAGTPAAVYAADRRAIGVRKTMVFYRGRAPSGTKTTWKMNEYRA 139 ***************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-46	3	178	IPR003441	NAC domain
PROSITE profile	PS51005	45.649	6	180	IPR003441	NAC domain
Pfam	PF02365	4.9E-24	7	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MAANGVPPGY RFYPTEEELI CFYLRNKLDG LRGDIERVIP VFEVYTVDPW QLKEIHERLC 60 GGAGEGEPWF FFCPRQEGEA RGGRPSRVTP TGYWKAAGTP AAVYAADRRA IGVRKTMVFY 120 RGRAPSGTKT TWKMNEYRAL QYDAGGTAEY GSSSSAHAAS PLSLPSQLRS EFSLCRLYTR 180 SGVLRQFDRR PLAGAASCPG EGPAEPSMAT AASLDDDDGS GGSKQQKMQL MERGNNNPYG 240 EDRICIRYWF LAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-29	6	141	17	144	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-29	6	141	17	144	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-29	6	141	17	144	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-29	6	141	17	144	NO APICAL MERISTEM PROTEIN
4dul_A	2e-29	6	141	17	144	NAC domain-containing protein 19
4dul_B	2e-29	6	141	17	144	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818071.1	1e-114	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	3e-59	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1E5URX2	1e-121	A0A1E5URX2_9POAL; NAC domain-containing protein 90
STRING	Si002586m	1e-111	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	9e-59	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]