PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g07070.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 115aa    MW: 13011.6 Da    PI: 6.9471
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g07070.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171157248
                                    SSS-.HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  2 grWT.teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    g WT +eEd++++d+vk++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Zjn_sc00009.1.g07070.1.sm.mkhc 11 GGWTlEEEDDKIIDLVKKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 57
                                    5677367899**********************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.802561IPR017930Myb domain
SuperFamilySSF466891.02E-19871IPR009057Homeodomain-like
SMARTSM007173.3E-14959IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221056IPR009057Homeodomain-like
CDDcd001677.02E-151357No hitNo description
PfamPF139211.6E-171674No hitNo description
Gene3DG3DSA:1.10.10.605.0E-75779IPR009057Homeodomain-like
PROSITE profilePS500904.4375879IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
RTSGPIRRAK GGWTLEEEDD KIIDLVKKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPD  60
IRKDAWTPEE ERALINAHRG LESDSVRDKG LEIDSFHEKG IEVSSTLDPV GEGPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-291081474MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-291081474C-Myb DNA-Binding Domain
1msf_C6e-291081474C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0430902e-60BT043090.1 Zea mays full-length cDNA clone ZM_BFc0095F17 mRNA, complete cds.
GenBankBT0549162e-60BT054916.1 Zea mays full-length cDNA clone ZM_BFc0181A17 mRNA, complete cds.
GenBankEU9707922e-60EU970792.1 Zea mays clone 350916 myb-like DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970536.13e-38transcription factor MYB3R-2
SwissprotQ0JHU72e-37MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A288CXV96e-38A0A288CXV9_ECHCG; Myb transcript factor 1
TrEMBLA0A3L6R3G29e-38A0A3L6R3G2_PANMI; Uncharacterized protein
STRINGORUFI01G40130.27e-38(Oryza rufipogon)
STRINGOBART01G36770.19e-38(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.25e-37myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]