PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g08270.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 336aa    MW: 36547.8 Da    PI: 6.2329
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g08270.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.45.2e-22110171259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS.TTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed.pkvveitYegeHnhe 59 
                                     +Dgy WrKYGqK +++++fprsY+rC+++   gCp+ k+v+r ++d p   +++Y  eH+++
  Zjn_sc00009.1.g08270.1.sm.mkhc 110 SDGYLWRKYGQKRITNTDFPRSYFRCSHHrerGCPAMKQVQRHSHDePPQYVVVYVHEHTCD 171
                                     7***************************99999*********87652678999******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-24100172IPR003657WRKY domain
SuperFamilySSF1182901.23E-21104171IPR003657WRKY domain
PROSITE profilePS5081119.015104173IPR003657WRKY domain
SMARTSM007741.2E-30109172IPR003657WRKY domain
PfamPF031062.7E-23111171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MHAHSRFAAS SSVSADEHEA LIRELTRGHE LTARLWAEAP RALRGQGQAE DTAAFILQEV  60
SRAFTVCISI MRSPPPSRAP PPPPPTEAAT RRFRDENAPR REIVTDAPYS DGYLWRKYGQ  120
KRITNTDFPR SYFRCSHHRE RGCPAMKQVQ RHSHDEPPQY VVVYVHEHTC DTTVWEPEVT  180
PSPAPAGATT SPLPLLADYL PGLASQQRGV AQAEQERQAM VSTLAVVLGA HSPAGSGSRV  240
AAFEREPQQQ QHGASASVVD PSVVGGGGEL PRLDVDAELD VMDYDVTGAM YLGDSYGLPD  300
DVTFAFGNYS NMQSVPFALS KAGVSILKTT SSPSSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-161111701068OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0638612e-63BT063861.1 Zea mays full-length cDNA clone ZM_BFc0113G18 mRNA, complete cds.
GenBankEU9564872e-63EU956487.1 Zea mays clone 1564344 WRKY DNA binding domain containing protein mRNA, complete cds.
GenBankJX4699482e-63JX469948.1 Zea mays subsp. mays clone UT3209 WRKY-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458684.11e-84probable WRKY transcription factor 64
TrEMBLC5XNA22e-83C5XNA2_SORBI; Uncharacterized protein
STRINGSb03g038200.14e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.19e-19WRKY DNA-binding protein 70