PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g11180.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CPP
Protein Properties Length: 390aa    MW: 42656 Da    PI: 11.0579
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g11180.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.92e-13208245240
                             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                     +kk CnC++s+Clk+YCeCfa+g++C+  C+C +C+N+ 
  Zjn_sc00009.1.g11180.1.am.mkhc 208 KKKCCNCRNSRCLKLYCECFASGAYCDG-CNCINCFNNP 245
                                     799*************************.********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.0E-15207247IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163416.058208390IPR005172CRC domain
PfamPF036389.5E-10209244IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
AQNPSFPSAA NARRRSRRHL RSGVRPRTIC RRLPRSRGGS PRPPRIRSFG VEWMAGKEPA  60
GGGPHQRPPT PAVSSQPPVK KLVRQLDFNS AAMAGNPAMA AAAAAVSRAL QPRAAHVGLP  120
HQQHTRATVP LGVPQQMQHR GLPVLRPHQA VGHVPLPRMA VAVPVPQLRP TLVQPVPRPP  180
VSVPLSVKPE SPNLRAKLYE GKDGTPTKKK CCNCRNSRCL KLYCECFASG AYCDGCNCIN  240
CFNNPGNDVT RREAIDATLE RNPDAFRPKI GSSPHTNRNN KNAMPDGSVP ISQSVHPPTL  300
GPFKVTYRPL LADIVQPDDI KELCKLLVVV SGQAAKAYTD RKTQEEKAAK TEDHKPGPGT  360
STNHDREENN QDRKGIQWLS NLKRLPILDR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232361.13e-99protein tesmin/TSO1-like CXC 5 isoform X1
RefseqXP_010232362.14e-99protein tesmin/TSO1-like CXC 5 isoform X2
RefseqXP_010232363.13e-99protein tesmin/TSO1-like CXC 5 isoform X3
RefseqXP_010232364.13e-99protein tesmin/TSO1-like CXC 5 isoform X4
TrEMBLQ94DS21e-109Q94DS2_ORYSJ; p0460E08.26 protein
STRINGPavir.Eb03237.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6231322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-27Tesmin/TSO1-like CXC domain-containing protein