PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00010.1.g03950.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 482aa    MW: 51836.5 Da    PI: 6.5591
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00010.1.g03950.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.9e-1198123126
                                     --S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                     ++++ C++++++GtC++G +CkF+H+
  Zjn_sc00010.1.g03950.1.sm.mkhc  98 PGEPDCSYYLKYGTCRFGTKCKFNHP 123
                                     5789*********************8 PP
2zf-CCCH18.82.9e-06250268422
                                     ---SGGGGTS--TTTTT-S CS
                         zf-CCCH   4 elCrffartGtCkyGdrCk 22 
                                     e+C+++a  G Ck+G  Ck
  Zjn_sc00010.1.g03950.1.sm.mkhc 250 EECKYYATPGGCKFGKACK 268
                                     79****************9 PP
3zf-CCCH33.85.5e-11296320226
                                     -S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                     ++++C f++rtG Cky  +CkF+H+
  Zjn_sc00010.1.g03950.1.sm.mkhc 296 GEKECLFYMRTGSCKYSINCKFHHP 320
                                     7899********************9 PP
4zf-CCCH24.45.2e-08432457227
                                     -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                     +++ C ++ r+G CkyG+ C F+H++
  Zjn_sc00010.1.g03950.1.sm.mkhc 432 DQPVCTYYGRFGVCKYGPACMFNHPF 457
                                     5799********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-597124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.21697125IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-899123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5102125IPR000571Zinc finger, CCCH-type
SMARTSM003560.023247273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.925251274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526294322IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-5294321IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8296320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5297321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.413430458IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042431457IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5432457IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-5433457IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MADADAHPPP PGGDAASSPI ASISPSYSAA AAAAIEEQLA GLGLTVAGGE AAFEPSGWDD  60
GPVPVVAGDD EVVPGEKVQA AVATSPAADA RVRFPRRPGE PDCSYYLKYG TCRFGTKCKF  120
NHPARKKKSR VKGSGGSGSG SGSNSSSNKA SSPKDDQAPK EEYEGLAPDI SDSLGFDDKG  180
SASNSIQGAD DKGSEYTSEN YRKTSNEIAA EPENESYSKK LDETNVTKHK IPKGAKDKRR  240
ETVAEGSILE ECKYYATPGG CKFGKACKNL HREGKEGKPE AEKIDLNFLG LPLRPGEKEC  300
LFYMRTGSCK YSINCKFHHP DPSNVSSKKP VLEHENSDTP QENVQAPSQT SVPIWPNQRA  360
MNEQHVPFVA PAQQYNAGMM PPQGVYPSPD WSGYHQVPLN PYYPPGVPFQ HYPPHLNHQM  420
YSTADIPGHQ QDQPVCTYYG RFGVCKYGPA CMFNHPFNFG PPVHAAGPPV PGQYPTPANF  480
TV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807655.10.0zinc finger CCCH domain-containing protein 65-like isoform X1
SwissprotQ2QTY21e-178C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A2T7EFS50.0A0A2T7EFS5_9POAL; Uncharacterized protein
STRINGGRMZM2G006493_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.12e-32C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]