PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g01330.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 296aa    MW: 32226.8 Da    PI: 10.106
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g01330.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.71e-113990147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                                    +++WT+eE++ l ++v ++G g W+tI +          R+  ++k++w+++
  Zjn_sc00011.1.g01330.1.sm.mkhc 39 KQKWTQEEEDALRRGVLKHGAGKWRTIQKDPEfsptlSSRSNIDLKDKWRNL 90
                                    79***********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.9053494IPR017930Myb domain
SuperFamilySSF466892.66E-153692IPR009057Homeodomain-like
SMARTSM007174.6E-83893IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-143990IPR009057Homeodomain-like
PfamPF002491.6E-83990IPR001005SANT/Myb domain
CDDcd116603.60E-194090No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MNTRRIGEDR PLLVYVECGW TLEKPQIAGG EARAMGAPKQ KWTQEEEDAL RRGVLKHGAG  60
KWRTIQKDPE FSPTLSSRSN IDLKDKWRNL SFSAGQGSRE KTRVPKITGP SSSALPAPQA  120
LLLPASNKIA EASAPADAEK KSQDGKASPK ESTAWRPHDA LCEDKIKTRC LQRGWKGLKV  180
DNKFYKLTDS FATKTPALVK ASTKKQKDPS KPLKASKNLG IFAAVSPALE AAAAAAAKVA  240
DAGAKAHLAH EHMMEADRIL KMAEETESLL TLAAEIYDRC SSGEIITVNP VSQKEF
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0945242e-72FP094524.1 Phyllostachys edulis cDNA clone: bphylf024j07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105225.11e-100single myb histone 3
SwissprotQ6WLH41e-101SMH3_MAIZE; Single myb histone 3
TrEMBLA0A0A9PJS41e-109A0A0A9PJS4_ARUDO; Smh4
STRINGPavir.Eb02802.1.p2e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-29telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]