PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00011.1.g02540.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 247aa MW: 26519.8 Da PI: 8.7234

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00011.1.g02540.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.4	1.2e-32	168	226	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ Zjn_sc00011.1.g02540.1.sm.mk 168 LDDGYRWRKYGQKAVKNSAHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 226 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.5E-33	154	226	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-28	162	227	IPR003657	WRKY domain
PROSITE profile	PS50811	28.449	163	228	IPR003657	WRKY domain
SMART	SM00774	2.0E-38	168	227	IPR003657	WRKY domain
Pfam	PF03106	6.6E-26	169	226	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MENQLQGDVD EAHALPSFPY FAAPSPPLGP PSLSSDDHHQ HGALAADLQQ QQQQPVAAAC 60 NSLLPLGGAG NQLQAPPRMV LPTMVDWSSL LQQASLMTPA VPGLQEAAAQ ADQSGENHCG 120 EVGASGSGSA SGSKESKAGG KVGAGRSGKK KVSRPRFAFQ TRSVNDILDD GYRWRKYGQK 180 AVKNSAHPRS YYRCTHHTCN VKKQVQRLAK DTSIVVTTYE GVHNHPCEKL MEALSPILKQ 240 LQFLSQF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-24	158	225	7	74	Probable WRKY transcription factor 4
2lex_A	5e-24	158	225	7	74	Probable WRKY transcription factor 4
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00539	DAP	Transfer from AT5G41570	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108909	1e-122	AK108909.1 Oryza sativa Japonica Group cDNA clone:002-152-G06, full insert sequence.
GenBank	AY341845	1e-122	AY341845.1 Oryza sativa (japonica cultivar-group) WRKY4 mRNA, complete cds.
GenBank	AY870607	1e-122	AY870607.1 Oryza sativa (japonica cultivar-group) WRKY23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969857.1	1e-111	probable WRKY transcription factor 56
TrEMBL	K3XLH8	1e-110	K3XLH8_SETIT; Uncharacterized protein
STRING	Si002751m	1e-111	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	2e-57	WRKY DNA-binding protein 56