PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g03350.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 203aa    MW: 23182.5 Da    PI: 6.0922
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g03350.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.65.9e-311849101
                                     HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
                    HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                                     +++d++++ ++ w+ +g+sfvv ++ +f +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF+++ F 
  Zjn_sc00011.1.g03350.1.am.mkhc   1 MVDDPATDAVVAWTPSGTSFVVANQADFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEDFI 70 
                                     899******************************************************9998.........********* PP

                                     XXXXXXXXXXXXXX CS
                    HSF_DNA-bind  88 kgkkellekikrkk 101
                                     +g+++ l++i+r+k
  Zjn_sc00011.1.g03350.1.am.mkhc  71 RGQRHRLKNIRRRK 84 
                                     ************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF004478.3E-28183IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004151.1E-48183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.1E-33183IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.75E-30183IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.9E-113244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-114557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVDDPATDAV VAWTPSGTSF VVANQADFCR DLLPKYFKHN NFSSFVRQLN TYGFRKVDPE  60
QWEFANEDFI RGQRHRLKNI RRRKPIFSHS SHTQGSPPYT DSRAKVSEID VNLEPAITET  120
GPSRDQHVED PPAVAPGVND GFWQQFLTEQ PGSDAHQEAQ SERRDGDNKA EQVRIGDREN  180
FWWGKSVEHM TEKLGHLTSA EKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-2618327120Heat shock factor protein 1
5d5u_B5e-2618336129Heat shock factor protein 1
5d5v_B5e-2618336129Heat shock factor protein 1
5d5v_D5e-2618336129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4924601e-104EU492460.1 Pennisetum glaucum heat shock transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569811.12e-62heat stress transcription factor A-4b
RefseqXP_004969950.13e-62heat stress transcription factor A-4b
SwissprotQ94J161e-62HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A1E5V8K76e-88A0A1E5V8K7_9POAL; Heat stress transcription factor A-4b
STRINGBRADI2G49860.18e-62(Brachypodium distachyon)
STRINGSi001439m1e-61(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.12e-42heat shock factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]