PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g05750.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 243aa    MW: 26361.3 Da    PI: 7.7826
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g05750.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.8e-097298127
                                  --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                  ykt+lC +f  +G+C + + C+FaHg+
  Zjn_sc00011.1.g05750.1.am.mk 72 YKTRLCERFESGGWCAHEEACTFAHGR 98
                                  9************************96 PP
2zf-CCCH23.97.5e-08143161826
                                   GGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                                    f+  GtC+yGd+C++aHg
  Zjn_sc00011.1.g05750.1.am.mk 143 EFRDKGTCRYGDKCNYAHG 161
                                   57778*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.1E-1466104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-870102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2917199IPR000571Zinc finger, CCCH-type
SMARTSM003560.0437198IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-77298IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4137162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6138163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-7139162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.704140163IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5141161IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MENESNATAS GNAGHNSSWE GSSVIVLPAE SAAARPKSQQ QCGAARPQQR EKEQQQQPGA  60
ELVPEPPAKV FYKTRLCERF ESGGWCAHEE ACTFAHGRAE LRPPLPLPPT FRRSRPAPPP  120
PADADDSWRA RFLYVGAGKV CFEFRDKGTC RYGDKCNYAH GTAAVQPTDT VYHTGPDPAR  180
KSATSPARAF SPGSSIYAPA TTRAFPPGHD VVDGPQGEVK PTPLELLSRK KLSGIYGDWP  240
EDF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819424.12e-40zinc finger CCCH domain-containing protein 1-like
TrEMBLA0A1E5VJ667e-44A0A1E5VJ66_9POAL; Uncharacterized protein
STRINGPavir.Ea00381.1.p4e-41(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-07C3H family protein