PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00011.1.g07300.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 230aa MW: 23451.9 Da PI: 9.5787

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00011.1.g07300.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.7	4.5e-37	42	95	4	57
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrk 57 + l+cprC+st+tkfCyynnysl qPr+fCk+CrryWt+GGalrnvPvGgg+r+ Zjn_sc00011.1.g07300.1.am.mk 42 AGLPCPRCESTDTKFCYYNNYSLGQPRHFCKGCRRYWTRGGALRNVPVGGGTRR 95 6789*************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.4E-31	44	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.565	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-17	46	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MVRRSAAGAM EAGHQVTEGN ALALVAAAAA GGGGGGGPKE PAGLPCPRCE STDTKFCYYN 60 NYSLGQPRHF CKGCRRYWTR GGALRNVPVG GGTRRGVPAA RRKRPTSASS SSSRASVLPP 120 PPLASSSPAA CYATARPYDL PPFMPALASP VAAVGDPDCR LLDLGGSFTS LLAPAAPDVR 180 FSAGFLMGGL PPVMMPAPPA SSAPSLLPPP VSQALPEGLI WGMGWPDLSI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	6e-50	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457194.2	7e-65	dof zinc finger protein DOF3.4
TrEMBL	A0A1B6Q141	2e-64	A0A1B6Q141_SORBI; Uncharacterized protein
STRING	Pavir.Ea00244.1.p	2e-65	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	2e-22	DNA binding with one finger 2.4