PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g07360.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 110aa    MW: 12822.7 Da    PI: 10.2722
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g07360.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-074670328
                                    SS-HHHHHHHHHHHHHTTTT-HHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIa 28
                                    +W+++E   +++a +++G++ Wk+++
  Zjn_sc00011.1.g07360.1.am.mkhc 46 KWSKDELTHFYEAYRRHGKD-WKKVM 70
                                    8*****************99.****9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.56E-54671IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MGPAKGTRTI SKTVIKGCVD QQHPEDPQSS SKSKQKKRRI AELDPKWSKD ELTHFYEAYR  60
RHGKDWKKVM NPQAEEVVKQ VEHLAKHGNV EMPQNRMQME VRIYPTPLLT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816481.18e-30protein ALWAYS EARLY 3-like
TrEMBLA0A3L6SNM22e-29A0A3L6SNM2_PANMI; Protein ALWAYS EARLY 2-like
STRINGPavir.J02622.1.p7e-29(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.22e-08DNA binding