PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g07570.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 443aa    MW: 47860.7 Da    PI: 7.3427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g07570.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.7e-14237282555
                                   HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   h + Er+RR+++N++f+ L+++lP+ a      K +K +iL +A eYI+sL+
  Zjn_sc00011.1.g07570.1.sm.mk 237 HMMSERKRREKLNDSFQALKTVLPPgA------KKDKTSILIRAREYIRSLE 282
                                   8899********************966......99999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.71232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-13234282No hitNo description
SuperFamilySSF474591.06E-15234298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-17236300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11237282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-13238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDSSWFHGYA AGNTGFVCGY AASCAPAELQ HEEEDAMLIS SQIQHHLNQI SMHMNMDDEV  60
VYDGALDIQQ QHPAVVDGLL GPQHATSFPS SSSSSSLSLR SGSLSCSPES SAHILGAPGA  120
AAVVGQYPEV SSHVPVPPAV VPYDHQNANV HVPATARELP AASRTAGAFK RYGRHLGPRR  180
QPKPGVCGQR MFKTALSVLS KMHVAASARH SQQYYYYDQA SAAEAAAAAP SVNQLQHMMS  240
ERKRREKLND SFQALKTVLP PGAKKDKTSI LIRAREYIRS LESKASELQE KNKALESRLN  300
HRGGNDAKHA AGNAEDSGEK VQIEITRAAK EEHWEIEPRD LCTLKILVHS RCNMTDVVLR  360
TLQCLKDQAA DDDVNLVSMS TSSGVPPHTN SSSPRALLTM QIKSSLGAKW EEQLVKDAVE  420
KVVADAAPTP PSAETAAAAS RRQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240245ERKRRE
2241246RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679269e-35AK367926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065A01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817328.11e-146putative transcription factor bHLH041
TrEMBLA0A2S3HYL51e-145A0A2S3HYL5_9POAL; Uncharacterized protein
STRINGSi001328m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-26bHLH family protein