PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g00550.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 215aa    MW: 23783.1 Da    PI: 6.8086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g00550.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09180208129
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCC CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPk 29 
                                   +rr+h ++Er+RR+++N+ +  Lr+l+P 
  Zjn_sc00012.1.g00550.1.sm.mk 180 QRRTHIAVERNRRRQMNEYLRILRSLMPG 208
                                   79**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.83E-8178210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.81E-7178213No hitNo description
Gene3DG3DSA:4.10.280.101.9E-7178211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.839179215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6180208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSAIKRMDKQ KATTTHSHLD SFAPEEEHSA ESGGGAEMVD YMLSQADHPA SQPTEGQSHQ  60
QVSFDKLRFS DVLEFADFGP KLAINQVDGG EDDDGYLFRF QPLPSLPAAP PRGDAAGQQH  120
HHVEQQEGSK KTADGGISDS TTLVEQADGG GREEKGGGQG KSGRRKRPRT VKTSEEVESQ  180
RRTHIAVERN RRRQMNEYLR ILRSLMPGSY VQRAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149157GGREEKGGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277506e-62KJ727750.1 Zea mays clone pUT5691 bHLH transcription factor (bHLH22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961059.14e-83transcription factor FAMA
TrEMBLA0A0A9GYP12e-85A0A0A9GYP1_ARUDO; FMA
STRINGSi021834m1e-81(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95023340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.15e-28bHLH family protein