PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g01050.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 259aa    MW: 28555 Da    PI: 10.1566
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g01050.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-1993143256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr++  +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ +l+ge
  Zjn_sc00012.1.g01050.1.am.mk  93 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAHRLRGE 143
                                   59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.05E-2792150No hitNo description
PROSITE profilePS5103222.69593150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-3093150IPR001471AP2/ERF domain
SMARTSM003801.1E-3193156IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-2293150IPR016177DNA-binding domain
PfamPF008473.3E-1394143IPR001471AP2/ERF domain
PRINTSPR003671.9E-994105IPR001471AP2/ERF domain
PRINTSPR003671.9E-9116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDASLRTLPP ASRFPGEVRS AFSSLRLAPG ASALDTVFSH LPAPVTVPPL GSGVYHRQCE  60
LLRHFAASQP SSSSSSSSSS VATFQAPASR QKLYRGVRQR QWGKWVAEIR LPQNRVRVWL  120
GTYDSPETAA HAYDRAAHRL RGEYARLNFP GVMDGRGDCP EDLQPLRAAV DAKIQAIRAR  180
LARTRARARR RREEQRFEGA SQAAPTTTKV ARPELSEDAT TTSDTTTAST TPYGSLDGEL  240
PLEHMPSFDP ELIWEVLNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1889150163ATERF1
3gcc_A4e-1889150163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0389881e-112BT038988.1 Zea mays full-length cDNA clone ZM_BFb0347O12 mRNA, complete cds.
GenBankKJ7275021e-112KJ727502.1 Zea mays clone pUT5361 AP2-EREBP transcription factor (EREB34) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808129.11e-101ethylene-responsive transcription factor ERF061
SwissprotQ9C7W26e-37ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A2T7EA691e-100A0A2T7EA69_9POAL; Uncharacterized protein
STRINGORGLA03G0412600.11e-101(Oryza glaberrima)
STRINGORGLA05G0229700.11e-101(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.14e-34ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]