PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g01420.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 254aa    MW: 27082.9 Da    PI: 5.1994
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g01420.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.33e-16116159248
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                                    y+GVr+++ +g+++AeIrd + ng  +r++lg+f taeeAa a+++
  Zjn_sc00012.1.g01420.1.am.mk 116 SYRGVRRRP-WGKFAAEIRDTRRNG--ARVWLGTFATAEEAALAYDR 159
                                   69*******.**********54455..******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.41E-20115172No hitNo description
SMARTSM003801.2E-18116182IPR001471AP2/ERF domain
PROSITE profilePS5103218.11116158IPR001471AP2/ERF domain
PfamPF008472.1E-11116159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-22116163IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-16116162IPR016177DNA-binding domain
PRINTSPR003679.3E-11117128IPR001471AP2/ERF domain
PRINTSPR003679.3E-11140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAIGGQGSGS NQPNEGSNIL ENVWATIMTE CSAATPASSS TAVSSSEAGE PKPEKILQRL  60
PSLGRWISMG AEEWDELLSG TTPDASGEEL LVSSPPALKH EDRASSRAAP VPTCKSYRGV  120
RRRPWGKFAA EIRDTRRNGA RVWLGTFATA EEAALAYDRE VAAAGSGGSE ATRVLRRRRR  180
RTGAADAASS TRSACSDQTM VSFAWGSGQE GGMMTERSSS DAGAIAFEDI GGECWDYLFA  240
PLWGDDILIR HQHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19115159448ATERF1
3gcc_A3e-19115159448ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172180RVLRRRRRR
2176181RRRRRT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241435e-32AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence.
GenBankAP0149615e-32AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126135e-32CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806647.19e-85ethylene-responsive transcription factor 15-like
TrEMBLA0A2S3H9P92e-83A0A2S3H9P9_9POAL; Uncharacterized protein
TrEMBLA0A3L6RAX92e-83A0A3L6RAX9_PANMI; Uncharacterized protein
STRINGPavir.Ca00939.1.p1e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-22ethylene response factor 1