PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g01430.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 657aa    MW: 70849.9 Da    PI: 8.4974
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g01430.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox413.2e-131372256
                                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                      Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                                  r+R+++ +eq+++Le+ F++   +p ++e+ ++  +l     + +++V++WFqNr    +
  Zjn_sc00012.1.g01430.1.am.mk 13 RPRWNPRPEQIRILEAIFNSgMVNPPRDEILRIRVQLsaygPVGDTNVFFWFQNRNCSSR 72
                                  89*****************99****************99999*************77666 PP
2Wus_type_Homeobox91.67.2e-301273263
             Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63
                                  +r+RW+P+peQi+iLe++++sG+++P+++ei ri+ +L++yG ++d+NVf+WFQNr   +r+
  Zjn_sc00012.1.g01430.1.am.mk 12 PRPRWNPRPEQIRILEAIFNSGMVNPPRDEILRIRVQLSAYGPVGDTNVFFWFQNRNCSSRR 73
                                  689*****************************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-9875IPR009057Homeodomain-like
PROSITE profilePS500719.183974IPR001356Homeobox domain
SMARTSM003895.8E-71178IPR001356Homeobox domain
CDDcd000867.62E-71273No hitNo description
Gene3DG3DSA:1.10.10.601.9E-41373IPR009057Homeodomain-like
PfamPF000465.6E-111372IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MRCDVDGRNP EPRPRWNPRP EQIRILEAIF NSGMVNPPRD EILRIRVQLS AYGPVGDTNV  60
FFWFQNRNCS SRRDAPAAAV INAGFMAPAT PMDFLTPAPV ESPAAHQLYY HSQITAPTVP  120
PTPDQLINSP DPLLLQWQQH QYMPATELGG LLGSQTSQYA HALATHSPVS PNVLLGLCNE  180
ALGQDCINMS SPNKGQQQWN TSATDVSTKT DAVSAAIRDD EKARLGSLHY DFGVTATATN  240
PVRAADAAST GTMLPSAAAP TNVAAAAASS VLTDQMQRYK KLFASRAWGW REPNSNSSDH  300
IDRTPAYPRL LDFGLIGRPS PPTATLVAVA RDAATSTVQF SVPAMRLDVS QFDEAAVLLR  360
HPAGELVLVD ESGVTIEPLQ QDGLQAGRDA AARPASRISR TARSGLMRQP ARGRLLFAGG  420
RTPLLASRNS QVPAHCRLHC QPLFHFLSAL QVTNAEQGAP PLRCSCTRWF DAPWSSTSSP  480
HCDPPAPSNK RSRCKRRSVV PLRLEAPATV VLSRVVMQRH GHSRVDRVVP FRLSRVEVWP  540
FCEIAVQVSP AREFRWQIFR TYSDIACGSV FRANVSSCHS VRSSADQPIV PGFLHSSVSS  600
STSTGSQLAP GRVSVADSPR AATAGDHEPV ADGGALPPPP VSAEHGADAP GNQLGLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1490495RSRCKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902422e-64AM490242.1 Zea mays mRNA for putative wuschel homeobox protein (wox9C gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961209.18e-71WUSCHEL-related homeobox 12
SwissprotA3B6V09e-52WOX12_ORYSJ; WUSCHEL-related homeobox 12
STRINGSi025013m3e-70(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.14e-20homeobox-3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]