PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g03280.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 444aa    MW: 49887.5 Da    PI: 4.7004
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g03280.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.5e-35181092102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k+ye++ed+++++++sw   g sfvv+++ ef++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+
  Zjn_sc00012.1.g03280.1.am.mk  18 FLIKTYEMVEDPATNRVVSWGPGGASFVVWNPPEFSQELLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFA 89 
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F +g+++ll++i+r+k 
  Zjn_sc00012.1.g03280.1.am.mk  90 NEDFIRGRTHLLKNIHRRKP 109
                                   *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.58E-3613107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-6214107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.8E-3914107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-3118107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-201841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-205668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-206981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEGSQSRSGG GSSSPPPFLI KTYEMVEDPA TNRVVSWGPG GASFVVWNPP EFSQELLPKY  60
FKHNNFSSFI RQLNTYGFRK IDPERWEFAN EDFIRGRTHL LKNIHRRKPV HSHSPQNQVN  120
APLAESERRE YEDEINRLKY EKSLLLADLQ KQHQQQCVID WQMQSLEDRL MQMDQRQKNI  180
VASLCDILRS NGVVSGSLLE TDHFSKKRRV PKKIGFFADD AAAEERQVPL LPTTGAVAET  240
PSMFRAHPVS AEPFDRMEMS LVSLEKFIQR ASEGSAEDLF ACSAAPSPVV PVGEVQSAPM  300
ETNIDVQPST GHVYSSAGFA ESSWYAQSPM LLLPDLHEDA PRTAEVDMNS DTTTADTSQD  360
EVTTETGGSH EPAKVNDLFW ERFLTETPRF GDCKREPTEA NEELTVAVDC SSLYHRDRVD  420
QITEQMEQLA SAEDAEVKSS ALNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-251110713120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961415.10.0heat stress transcription factor A-4d
SwissprotQ93VB51e-162HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLK3Z6570.0K3Z657_SETIT; Uncharacterized protein
STRINGSi022026m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-70heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]