PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g03460.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 253aa    MW: 28071.8 Da    PI: 5.8233
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g03460.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-07104129326
                                   S---SGGGGTS...--TTTTT-SS-SS CS
                       zf-CCCH   3 telCrffartG...tCkyGdrCkFaHg 26 
                                    e+C++f+r      C++G+ C FaHg
  Zjn_sc00012.1.g03460.1.am.mk 104 GEPCPDFQR-RpgaACPRGNACAFAHG 129
                                   589****99.558*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.4E-6101133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.516101131IPR000571Zinc finger, CCCH-type
SMARTSM003560.1101130IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-5105129IPR000571Zinc finger, CCCH-type
SMARTSM0035637139162IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MVSREQHHSH DYEHLMLDPA ALGVSWAEPA ALDIPPPLLA ALVEYLSAAA GGDGDAEADD  60
EFMMYEFKIR RCARARSHDW TSCPYAHPGE AARRRDPRRV LYTGEPCPDF QRRPGAACPR  120
GNACAFAHGT FELWLHPSRY RTRACRAGVS CRRRVCFFAH TAAELRAAPK VEESPLSLSP  180
KSTLASLWES PPVSPVQGRR WIDAADEADE MEDLMLAMRE LSFRKAATSS APVLPLVTEE  240
DGPDLGWVSE LVM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303637.11e-144zinc finger CCCH domain-containing protein 37-like
SwissprotQ65X921e-130C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1Z5R4P21e-143A0A1Z5R4P2_SORBI; Uncharacterized protein
STRINGORUFI05G24800.11e-129(Oryza rufipogon)
STRINGOS05T0525900-011e-129(Oryza sativa)
STRINGORGLA05G0205900.11e-129(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112091926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-50C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]