PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00012.1.g05400.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 295aa MW: 31318.1 Da PI: 6.8617

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00012.1.g05400.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.8	4.3e-37	28	83	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Zjn_sc00012.1.g05400.1.sm.mk 28 PSCPRCGSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 83 58***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	14	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.658	28	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-31	29	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MLPPYPAGGR RAVLLDHRRY RPNVEVAPSC PRCGSPNTKF CYYNNYSLSQ PRYFCKGCRR 60 YWTKGGSLRN VPVGGGCRKN RRGKSARSLA AGGGAATFSH RFPGALRPDL LLEGMADSPA 120 GIVGSQPVSA DKPGVADGSA IDLALLYAKF LNPNAVQCPV VQESADMTSG SSSDMSPNAA 180 PQPDQPFSSQ DAFGNNLPVP SSTEPSAEPA LPSPDSRTEA LGDLSFSVDQ SCYQALGLPT 240 DSGELILPST WRHEAKYEPF DPLPAMSLHD SITGADDVWT NAPACQGLEA ALCRP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087262	1e-97	BT087262.1 Zea mays full-length cDNA clone ZM_BFb0021J09 mRNA, complete cds.
GenBank	EU966549	1e-97	EU966549.1 Zea mays clone 295206 dof domain, zinc finger family protein mRNA, complete cds.
GenBank	JX428477	1e-97	JX428477.1 Zea mays subsp. mays clone pUT3073 DOF20 C2C2-DOF type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961942.1	1e-124	dof zinc finger protein DOF1.8
TrEMBL	A0A1D8F0J0	1e-127	A0A1D8F0J0_9POAL; Dof protein
STRING	Si022633m	1e-123	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	8e-41	Dof family protein