PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00012.1.g09180.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 825aa MW: 90981.4 Da PI: 5.8671

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00012.1.g09180.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	111.8	4.2e-35	187	262	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCead+ e+k yhrrh+vC +++a++vl++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k Zjn_sc00012.1.g09180.1.sm.mkhc 187 RCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVLLDGVQKRYCQQCGKFHVLLDFDEDKRSCRRKLERHNKRRRRK 262 6************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.4E-27	184	249	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.615	185	262	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.01E-33	186	266	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.8E-27	188	262	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055070	Biological Process	copper ion homeostasis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 825 aa Download sequence Send to blast
MDAPYSGGGG VDAGEPVWDW GNLLDFVVQD DDSLVLPWDD VAGTGAAGPT EAGASLLATP 60 PPQPAEVEAN QEPEPEPEPE PVLPPLPLHV QGIGRRVRKR DPRLVCPNYL AGRVPCACPE 120 VDEMAAAAEV EDVATELLAG ARKKVKTAGR RGKAGAVGGA GGSGGGVSTT GGGSGGGGRA 180 VVAAEMRCQV PGCEADIREL KGYHRRHRVC LRCAHAAAVL LDGVQKRYCQ QCGKFHVLLD 240 FDEDKRSCRR KLERHNKRRR RKPDSKVPFE KEMDEHLDLS ADVSGDGELR EENIECTTSE 300 MLETVLSNKV LDRETPMGSE DVLSSPTCTQ PNLQNEQSKS IVTFAASVEA SSGAKQESVK 360 LNNSPIHDLK TAYSSSCPTG RISFKLYDWN PAEFPRRLRH QIFEWLASMP VELEGYIRPG 420 CTILTVFIAM PQHMWDKLSD DTANLLRNLV NCPNSLLLGK GNFFIHIDNM IFQVLKDGAT 480 LMSTRLEMQA PRIHYVHPTW FEAGKPVELF VCGSSLDQPK FRSLLSFDGN YLKHDCFRVA 540 SLDAFDCVEK DDLKLDSQHE MFRISISGSR PDTQGPAFVE VENMFGLSNF VPILFGSRQL 600 CSELAKIQDV LCGSCKNNDI FEEFPSASSD PCECKKVKSA AMSGFLIDIG WLIRKPSSEE 660 FKNVLSLTNI QRWVYMLKFL IQNDFLNVLE IIVKSMDNFI GSEILSNLEK GRLEDHVATF 720 LAYLNHAQSI VNQKAKHGEE TQLETRLVTD KFPKHQSLGT SVPLDKGKTT GLGGHNDLLL 780 TSAACEEEVT MPLMTKDATH RQCCHPDISA RWLKHSRVGP QEHDS

Sequence ? help Back to Top

Protein Sequence Length: 825 aa Download sequence Send to blast

MDAPYSGGGG VDAGEPVWDW GNLLDFVVQD DDSLVLPWDD VAGTGAAGPT EAGASLLATP  60
PPQPAEVEAN QEPEPEPEPE PVLPPLPLHV QGIGRRVRKR DPRLVCPNYL AGRVPCACPE  120
VDEMAAAAEV EDVATELLAG ARKKVKTAGR RGKAGAVGGA GGSGGGVSTT GGGSGGGGRA  180
VVAAEMRCQV PGCEADIREL KGYHRRHRVC LRCAHAAAVL LDGVQKRYCQ QCGKFHVLLD  240
FDEDKRSCRR KLERHNKRRR RKPDSKVPFE KEMDEHLDLS ADVSGDGELR EENIECTTSE  300
MLETVLSNKV LDRETPMGSE DVLSSPTCTQ PNLQNEQSKS IVTFAASVEA SSGAKQESVK  360
LNNSPIHDLK TAYSSSCPTG RISFKLYDWN PAEFPRRLRH QIFEWLASMP VELEGYIRPG  420
CTILTVFIAM PQHMWDKLSD DTANLLRNLV NCPNSLLLGK GNFFIHIDNM IFQVLKDGAT  480
LMSTRLEMQA PRIHYVHPTW FEAGKPVELF VCGSSLDQPK FRSLLSFDGN YLKHDCFRVA  540
SLDAFDCVEK DDLKLDSQHE MFRISISGSR PDTQGPAFVE VENMFGLSNF VPILFGSRQL  600
CSELAKIQDV LCGSCKNNDI FEEFPSASSD PCECKKVKSA AMSGFLIDIG WLIRKPSSEE  660
FKNVLSLTNI QRWVYMLKFL IQNDFLNVLE IIVKSMDNFI GSEILSNLEK GRLEDHVATF  720
LAYLNHAQSI VNQKAKHGEE TQLETRLVTD KFPKHQSLGT SVPLDKGKTT GLGGHNDLLL  780
TSAACEEEVT MPLMTKDATH RQCCHPDISA RWLKHSRVGP QEHDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul5_A	2e-36	187	266	5	84	squamosa promoter binding protein-like 7
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	262	KRSCRRKLERHNKRRRRKP
2	248	260	RRKLERHNKRRRR
3	255	262	NKRRRRKP
4	256	261	KRRRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00604	PBM	Transfer from AT5G18830	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805456.1	0.0	squamosa promoter-binding-like protein 9
Swissprot	Q6I576	0.0	SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBL	A0A3L6T078	0.0	A0A3L6T078_PANMI; Squamosa promoter-binding-like protein 9
STRING	GRMZM2G109354_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6922	33	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	1e-136	squamosa promoter binding protein-like 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]