PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g00390.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 569aa    MW: 63612.9 Da    PI: 6.8317
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g00390.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.64.9e-094014381954
                                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  Zjn_sc00013.1.g00390.1.sm.mkhc 401 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 438
                                     665559******************************88 PP
2BELL109.12.7e-35264335172
                            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                     e+qelq+k akL+ +l eVd++Yk+y++q+q v++sF++vag g+akpY ++Al++iS+hFrcLkdai +qi
  Zjn_sc00013.1.g00390.1.sm.mkhc 264 EKQELQNKMAKLMAMLFEVDRKYKHYYHQMQLVAASFDMVAGSGAAKPYSAVALQTISKHFRCLKDAINDQI 335
                                     689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.3E-48188333IPR006563POX domain
PfamPF075263.0E-47194331IPR006563POX domain
PROSITE profilePS5007112.357379442IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-28381451IPR009057Homeodomain-like
SMARTSM003891.6E-9382446IPR001356Homeobox domain
CDDcd000864.27E-12382443No hitNo description
SuperFamilySSF466892.52E-17383449IPR009057Homeodomain-like
PfamPF059208.9E-18399438IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MATYYSSPGN ERDSQTMYSA ETSNASYYVP SALGNMLYPN NVSSRPYTEI SGTIQHQQNF  60
MELPHHPSSV SHDSSSKEAT NMISSLTEQR SFGPLKDTRT EMLMHLMDGA HSGYINLIHN  120
DAHNTTQHEF AMLNHDSTSV PSAPGQGFSL SLNTHTMAPS YPNWSSKPDL LATHSYQGDE  180
NRIKNIQSEA SQAIRNSKYL KAAQELLDEI VSVWKSIKRK ADKCNAEAGK ADVKETEYGT  240
SSGGVSSNPQ EASANAAAEL STAEKQELQN KMAKLMAMLF EVDRKYKHYY HQMQLVAASF  300
DMVAGSGAAK PYSAVALQTI SKHFRCLKDA INDQISIIQK KLGEEDNASG KEGRITRLRY  360
IDQQLRQQRA FQQYGMLQQN AWRPQRGLPE NSVSILRAWL FEHFLHPYPK DSEKLMLARQ  420
TGLTRSQISN WFINARVRLW KPMIEDMYKE EIGQVELDSN SSSDSASRSK FKVPSSDGKE  480
DLKSSSSQAC QTSQLGESKP NIGMMSLGGA PGSFHNEANR DDSFTNLMLK DQTPGEMDGR  540
FLHDSVTHHP GDSARFMAYH FAELGRIEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16388445158Homeobox protein Meis1
4xrs_B3e-16388445158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982177.10.0BEL1-like homeodomain protein 7
RefseqXP_004982178.10.0BEL1-like homeodomain protein 7
SwissprotO656851e-111BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLA0A0A8Y1Y70.0A0A0A8Y1Y7_ARUDO; Uncharacterized protein
STRINGPavir.Ib04256.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-99BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]