PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g01000.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 207aa    MW: 22266.2 Da    PI: 9.4717
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g01000.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA531.1e-16137177142
                       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheS 42 
                                     +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k rk+    S
  Zjn_sc00013.1.g01000.1.sm.mkhc 137 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKVRKESKTPS 177
                                     69****************************.99999877666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.0E-9135193IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115216.75136171IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-12138178IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860141161IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MESRPGGTNL VEPRGQGAAV PPGGVAMQPW WTGGGLGAVS PAVVAPGITP VGGADKAGDD  60
ARGESSEESR RSGESKDGSI SQEKNHATLQ SQMPALASAT YQYPDAYYAG MIGPYGTQPG  120
IPGLTHSRMP LPLEISEEPV YVNAKQYHGI LRRRQSRAKA ELEKKVVKVR KESKTPSKSM  180
PLQTYIYGRG RHEVMIADWQ MLCQPIH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632634.12e-74nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632635.12e-74nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632636.12e-74nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632637.12e-74nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632638.11e-74nuclear transcription factor Y subunit A-9 isoform X2
TrEMBLA0A3L6TLH38e-76A0A3L6TLH3_PANMI; Nuclear transcription factor Y subunit A-1-like
STRINGOMERI03G25970.15e-74(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.18e-17nuclear factor Y, subunit A9