PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g02420.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 230aa    MW: 23905.6 Da    PI: 8.5052
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g02420.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer84.51.2e-261060457
                   ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                                   +Y+eC++NhAa+lG++a DGC+E++p+   ++++aa+ CaACgCHRnFHR+  
  Zjn_sc00013.1.g02420.1.am.mk 10 EVYRECMRNHAANLGTYASDGCCEYTPD---DAHPAAMLCAACGCHRNFHRKAF 60
                                  68*************************8...678*****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.3E-211159IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.4E-201258IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.0591259IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-191258IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.26E-15103176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-26105176IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-26115176IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEQHQERPRE VYRECMRNHA ANLGTYASDG CCEYTPDDAH PAAMLCAACG CHRNFHRKAF  60
LDAVSGALGA ASPHSSPMLR SPGAAPAGYG MHMGVAPTAA AGMGGGDAHG SAGRRRTRTK  120
FTEEQKERML RFAERLGWRM PKREPGRALG DDDVARFCRE IGVTRQVFKV WMHNHKVGGG  180
SGGGAGAGGA AQTSSSTTRG GGGGGGGGGG SLSPAIGEDD EEVRGSGMSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A4e-191141831780ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466561.12e-98zinc-finger homeodomain protein 11
SwissprotA2XLF41e-88ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV51e-88ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLC5WMZ94e-97C5WMZ9_SORBI; Uncharacterized protein
STRINGSb01g010020.17e-98(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.11e-37homeobox protein 24