PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g02620.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 692aa    MW: 75623.8 Da    PI: 4.3518
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g02620.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-12182223346
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     +WT eE +ll+++ + +Gg+ W+ Ia+++  ++t  qc +++++
  Zjn_sc00013.1.g02620.1.am.mkhc 182 SWTDEETLLLLEGLEIFGGK-WAEIAEHVA-TKTKAQCMLHFLQ 223
                                     7*******************.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5093411.849152IPR007526SWIRM domain
SuperFamilySSF466893.49E-5344IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.101.3E-4448IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS501358.798119165IPR000433Zinc finger, ZZ-type
SMARTSM002911.6E-7119163IPR000433Zinc finger, ZZ-type
SuperFamilySSF578502.47E-9121160No hitNo description
PfamPF005699.3E-6122157IPR000433Zinc finger, ZZ-type
CDDcd023361.42E-21123167No hitNo description
PROSITE patternPS013570125151IPR000433Zinc finger, ZZ-type
PROSITE profilePS5129321.448178229IPR017884SANT domain
SuperFamilySSF466897.48E-13178233IPR009057Homeodomain-like
SMARTSM007178.5E-13179227IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-9181222IPR009057Homeodomain-like
PfamPF002491.6E-11182224IPR001005SANT/Myb domain
CDDcd001670.00219200224No hitNo description
PfamPF164958.7E-22579658IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MMKFHANPQL QLESKDLAQL SIGEVDARQE VLEFLDHWGL INFHPFPPSG QEDSKLDESH  60
SNPHNEEKVS LIDQLFKFEP VQSYMIPLPK KDDMEAPAPL PSLFPDPALV EDVITAAEPS  120
VEYHCNSCSV DCSRKRYHCR TQADFDLCCD CYNEGKFDTG MAKTDFILMD SSEVSGGASG  180
TSWTDEETLL LLEGLEIFGG KWAEIAEHVA TKTKAQCMLH FLQMQIEDHF HDGEDIHQNI  240
AGTTEQASTE TVTAQTPEKM EVEDKEEGKD NADDKPSETT AGNCEGKQEN TNAEENKDTQ  300
NSGGKDSVAS PNTEEPKQSS DTQPSADVDT SGENLSNVAT DILKAAFEAI GQSPTLEGSF  360
ADVGNPVMAL AAFLAGLVED DNATTSCHSS LKAISEVSPS LQLASRHCFI LEDPPNDLKD  420
TFDFVSNINT DGDEDKIQTS NGTEKEKVNE KEDTALSVDK QKNSTISLND HQESENKNMS  480
SDDCPIVGAK TNIAKESVDP PLLDKSASNN TEGSNTVASN IELGKDEPSA EVEASDKAPL  540
KGKGELEPNT ESLVANEDKD SITTTKKNDS ITRLKRAAAT AISAAAVKAK FLAEHEEYQI  600
RRLTALMIEK LFQKIEVKMS LFAEIEQVVL RTREYTEKTR KKLLLERNAI IAARMGALPS  660
RANQPGVTGN RLPPGYGNPI VRPPNAMPRP SS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981948.10.0SWI/SNF complex subunit SWI3D isoform X3
TrEMBLK4A5I60.0K4A5I6_SETIT; Uncharacterized protein
STRINGSi034135m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45421214