PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g04690.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 243aa    MW: 27319.3 Da    PI: 10.156
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g04690.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.53.9e-37134231198
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   +CaaCk+lrrkC++ Cv+apyfp ++++ fa vh++FGasnv+k+l+++p+  r da++sl+yeA+ar+rdPvyG+v+ il
  Zjn_sc00013.1.g04690.1.am.mk 134 PCAACKLLRRKCTQVCVFAPYFPPDNAAMFASVHEVFGASNVSKILNDVPQALRGDAANSLAYEADARIRDPVYGCVAYIL 214
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallk 98 
                                    lq ++++ +a ++++ 
  Zjn_sc00013.1.g04690.1.am.mk 215 ILQCKVKEISAGIDAAS 231
                                   *******9998877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.886133234IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-38134228IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MLLRWRCWDE HHNEQRQRWV WRHVQLSCTR PFSFRQQWRQ LIRGGWSRQA GGDLGLLRSR  60
GDLHPCLTRA SSSCLVILVM NSSSSGRHHE PFGRIPLLFP TNPSRARSGS PRAQPRYAPP  120
PRGDRRSMSS SISPCAACKL LRRKCTQVCV FAPYFPPDNA AMFASVHEVF GASNVSKILN  180
DVPQALRGDA ANSLAYEADA RIRDPVYGCV AYILILQCKV KEISAGIDAA SMELDHLASR  240
TSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3813323410111LOB family transfactor Ramosa2.1
5ly0_B2e-3813323410111LOB family transfactor Ramosa2.1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2943544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.11e-43ASYMMETRIC LEAVES 2-like 1