PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g05610.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 906aa    MW: 96737.7 Da    PI: 9.1661
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g05610.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.82.2e-07502552755
                           AP2   7 rwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   r ++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Zjn_sc00013.1.g05610.1.am.mk 502 RAHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDMEEKAARAYDLAALKYWG 552
                                   56899**********433.44555535555.77******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.052496560IPR001471AP2/ERF domain
SMARTSM003801.5E-12502566IPR001471AP2/ERF domain
CDDcd000186.83E-12502559No hitNo description
SuperFamilySSF541719.15E-10502561IPR016177DNA-binding domain
PfamPF008471.9E-5502552IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-8504560IPR001471AP2/ERF domain
SMARTSM003801.7E-4584727IPR001471AP2/ERF domain
PROSITE profilePS510329.717650721IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-6694721IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MTHHCMHIPI DRSTDEIDRA RPGPPRVKVS HSRRVYNVNA RRCSCVQPRI THLVSLSRFS  60
VAASREKIER KGPELQSVRY DRHHPSKPHA TFFPAHRSRP RLLRSRPPAT RAHSAYLSPH  120
LARSDTDRSR PSPFKDAQLL YPGRVPDHCA VSSAMIDLSS SLLPTTSATT SSSSGPAGGP  180
RPRYEMTSNS SQNVSTCSTG GRDAAAAGGS WLGFSLSPHH MVASMDAAAG GADNGVQQHY  240
GGGLYYPPVT SSPAPFCYAL GSGQESVVTQ AAGANGGGFY PGLSSMPLRS DGSLCITEAL  300
RSGEEEQHHG VVASLAPPKL EDFLGTGPAM AMSLNNSTGL YYGGDHGHSA CLQPLQCAMI  360
PGATAHDVYG HASMVDEQSA AAIAASWFAA RGVGGYDVNS TGVDAALVPV AACHPLALSM  420
SSGSGSQTSC VTMQMSAHAD PVAEYIAMEG SKKRGSTDRG AGQKQTVHRK SVDTFGQRTY  480
SQVPNPLDPA PLLSASPYAV TRAHRWTGRY EAHLWDNSCR KEGQTRKGRQ GGYDMEEKAA  540
RAYDLAALKY WGPSTHINFS LEDYREELEE MKKMTRQEYV AHLRRHHQHG RWQARIGRVS  600
GNKDLYLGTF TLAPPQRMFA LPILAHFFAA LLRVRRRRVP APVRVSVLVT FRKAGSPQSA  660
GSFACSIDRS RLARLTPTAV KDRCDCRSVV VACVSTQDEA AEAYDVAAIK FRGLNAVTNF  720
DITRYDVEKI MESSTLLPSE LVRRRKDGDA GTAAAAITAG DDTAVANAAA ALVHAGSTAL  780
DWKIQAAAAA LPAPARTDER AEQNHELLAS EHVIVSVDAN NAHGNAGAHV SNASSLSTSV  840
NNSREQSADR GGGLAVLFAK PVVSAASKLS CPPLPLGSWV SPSPVSARPA MSIAHLPMFA  900
AWTDAA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753183e-70AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796942.11e-180AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1D6L6650.0A0A1D6L665_MAIZE; AP2-like ethylene-responsive transcription factor ANT
STRINGPavir.J24038.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.12e-75AP2 family protein