PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g06170.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 684aa    MW: 73749.5 Da    PI: 10.285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g06170.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.51.8e-16567613455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      hn  ErrRRdriN+++  L+el+P++      K +Ka+iL + +eY+ksLq
  Zjn_sc00013.1.g06170.1.am.mkhc 567 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDESIEYLKSLQ 613
                                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.74E-16558617No hitNo description
SuperFamilySSF474592.62E-19561625IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.216563612IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-13567613IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-21567624IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-17569618IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MISLLLALQP PHRTGRTEAQ SIGARSMDAR RVTTQTCLGD RAQFRESRLK VSSGREHGVT  60
PRKRRPGEQR YARRHVDWNM PRPRGARCDH VAFGEHVICH EPTTRSARQV GSGDSVKGRL  120
GNEQPDGNLC LRAACEQERS SDNRAIKRGQ YQQDAPSPSI GRPPAAACST HTSHHKLQFR  180
YPHRHDPQDK RTARPPSPRQ GRPRRVGIRN PNRAPPLAEA HLLASPRGAA APIPFQAELP  240
IPRAAVAIYP APRGSDNDAP ALARLIAHQN PQLQKSRSLS AQKGYILVVP RMLYRGTVAT  300
APLEAFFLRL PLLAARGGDC SCSRVAVAGG KNSPGGRART VTNDMDGKAR SAANQKKPII  360
ADSDLVELLW HNGSVVAQPQ ATHQRAAAPS DRPSSSGLTG EETAAWFPDT LDDALEKDLY  420
TQLWYSSIVD ASPQPAGDAL GGPSSQPPPV GSGGVESSWA GDISSTFCGS NQVFDGVPVG  480
DTALPSEAPC GTSTRDGAGT GTSSSGGSGS NFGGSGLRSD GGHVHKKKGR CRDVADSRSE  540
DIECEATEVT KSSRRYGSKR RTRAAEVHNL SERRRRDRIN EKMRALQELI PHCNKTDKAS  600
ILDESIEYLK SLQMQVQMQN INIREISNPF LHPDGEQTAA PQVLGSHTYG PRTTQAAQPR  660
RITELPASTV VPTSTAGLPP TNGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1558575KRRTRAAEVHNLSERRRR
2571576ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981539.11e-115transcription factor PIF4 isoform X1
RefseqXP_004981540.11e-115transcription factor PIF4 isoform X1
RefseqXP_012704121.11e-115transcription factor PIF4 isoform X1
TrEMBLA0A3L6TIV11e-117A0A3L6TIV1_PANMI; Transcription factor PIF4-like isoform X1
STRINGPavir.Ia00490.1.p1e-118(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-29phytochrome interacting factor 3