PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00013.1.g06310.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 878aa MW: 92779.5 Da PI: 12.0314

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00013.1.g06310.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.4	1.3e-34	622	739	2	124
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaessss 80 g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a ai +l+ + ++a ++ +++ ++ Zjn_sc00013.1.g06310.1.am.mk 622 SGGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGYDQPSKAIEWLINAAAGAIEKLPAL-DPAAFAVvpAPNEAKV 701 579*************************************************************.4444344664444455 PP TCP 81 sasnsssgkaaksaakskksqksaasalnlak.esrakararare 124 +++ + +++ s+ s++s+ s l+l++ +sra+a+ r re Zjn_sc00013.1.g06310.1.am.mk 702 NQQ-----R-GSKSGGSSTSETSKGSELSLSRsDSRASAS-RDRE 739 544.....2.222334444555555557777745554443.3344 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.8E-33	623	730	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.181	624	682	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence Send to blast
MVDNAPVTIS TIDKEGTVDA QRFCRGGISS RSRATGRRCG ISSALSRRRD RIALLRAQYR 60 LRRRSAFLRP VTVCLAHGAM IELSQYSGNL VCYGRVCLRS GLRLSDRIRS RRSHRSDRIA 120 LLFDARLRIL FGAAPSPSIP GRNVSPGAAN GDRTSGAAQP ITTRGHFHTG RGRAATRRRG 180 FPSGACQKIP RPVGESVCRR IPGQWVKAAA GESRHVDFHR ERGAAAVRAR SSPVVRPALR 240 CVLRDFVAGN KQISTVAGGR QETTVKSMAG TGALPCRQVL RRHVQPASPS RGCRRHLLIN 300 LIPLPGAATG IDGCQPPRRR TSPSRLSPVA AKCQLLRVFF SAVEAAEQAV AMHMRRLPLG 360 AAAAAAIRYA RYGSKRRIAA ASLPSTAARP TRPTDRFTDK CARAVQRRRR HQISHSAGPS 420 KACRRLLLRG SARRVRREER ERGLLRVSVR AGGLEATAKT PRKGVAGARG DKTGRGGVRA 480 AAGPARTSTP ETGASSTRSR CHISAAAAAA AALPPLAPSS RKLPGAASPP HPPQELLHKD 540 GAFPPLAAPA AYERLQRAGM DDGAAGGAGA GELGRSQGAK RGRGGVMRGS EADAAAWGQP 600 PALPPPPQGA GTASRICRVG RSGGKDRHSK VYTAKGIRDR RVRLSVPTAI QFYDLQDRLG 660 YDQPSKAIEW LINAAAGAIE KLPALDPAAF AVVPAPNEAK VNQQRGSKSG GSSTSETSKG 720 SELSLSRSDS RASASRDREA ASFTELLTGV AEHRQAWPSP PNVSAAAADC VGIAHPEKGA 780 NGMSTHAFSG LAGVKFGNAP PFGMDALAAA SASAPAGDYN LNFSMSSGHQ QQQLQPFLFG 840 HAAAAAAHPS SENHLSASAA LQLWDGFRHS GMKEKSKN

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence Send to blast

MVDNAPVTIS TIDKEGTVDA QRFCRGGISS RSRATGRRCG ISSALSRRRD RIALLRAQYR  60
LRRRSAFLRP VTVCLAHGAM IELSQYSGNL VCYGRVCLRS GLRLSDRIRS RRSHRSDRIA  120
LLFDARLRIL FGAAPSPSIP GRNVSPGAAN GDRTSGAAQP ITTRGHFHTG RGRAATRRRG  180
FPSGACQKIP RPVGESVCRR IPGQWVKAAA GESRHVDFHR ERGAAAVRAR SSPVVRPALR  240
CVLRDFVAGN KQISTVAGGR QETTVKSMAG TGALPCRQVL RRHVQPASPS RGCRRHLLIN  300
LIPLPGAATG IDGCQPPRRR TSPSRLSPVA AKCQLLRVFF SAVEAAEQAV AMHMRRLPLG  360
AAAAAAIRYA RYGSKRRIAA ASLPSTAARP TRPTDRFTDK CARAVQRRRR HQISHSAGPS  420
KACRRLLLRG SARRVRREER ERGLLRVSVR AGGLEATAKT PRKGVAGARG DKTGRGGVRA  480
AAGPARTSTP ETGASSTRSR CHISAAAAAA AALPPLAPSS RKLPGAASPP HPPQELLHKD  540
GAFPPLAAPA AYERLQRAGM DDGAAGGAGA GELGRSQGAK RGRGGVMRGS EADAAAWGQP  600
PALPPPPQGA GTASRICRVG RSGGKDRHSK VYTAKGIRDR RVRLSVPTAI QFYDLQDRLG  660
YDQPSKAIEW LINAAAGAIE KLPALDPAAF AVVPAPNEAK VNQQRGSKSG GSSTSETSKG  720
SELSLSRSDS RASASRDREA ASFTELLTGV AEHRQAWPSP PNVSAAAADC VGIAHPEKGA  780
NGMSTHAFSG LAGVKFGNAP PFGMDALAAA SASAPAGDYN LNFSMSSGHQ QQQLQPFLFG  840
HAAAAAAHPS SENHLSASAA LQLWDGFRHS GMKEKSKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-24	629	683	1	55	Putative transcription factor PCF6
5zkt_B	6e-24	629	683	1	55	Putative transcription factor PCF6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.2	6e-32	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2