PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g07200.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 371aa    MW: 40859.6 Da    PI: 4.6332
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g07200.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-17124164345
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                    W+ eEd +l++a+k+ G++ W+ Ia++++ gRt++++k++w+
  Zjn_sc00013.1.g07200.1.sm.mk 124 IWSDEEDMILIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 164
                                   6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.163117171IPR017930Myb domain
SuperFamilySSF466897.9E-16120172IPR009057Homeodomain-like
SMARTSM007171.1E-16121169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-19125165IPR009057Homeodomain-like
CDDcd001671.65E-14125167No hitNo description
PfamPF002499.0E-16125164IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDFSGFEQHT AWLHPVDHHQ PFDSYMQQNG FCHPVDHQFE GVGEYASAGS VVSSAAFNDL  60
GHQCHAEREA RNGFGSYKAY EMSSRFVPRK KASGSSLKKA NVVKGQWTQE EDRSDILMQM  120
QKDIWSDEED MILIQAHKEV GNKWAEIAKR LPGRTENSIK NHWNATKRRQ FARRRSRASS  180
KAPKSGTLLQ SYIKSLGIGP TKTVETLLAQ PPLSPSSSSP APPGAKPADF NDDGCPELEP  240
DQSNAPNVQG ILGAIHENSC GEVKPCEELL GPICDGFLVD MGDGLFCTPE MAAFQVYSVG  300
DEVDGDFIFN HLDCPVKVDR EEMCVDMAWV DDALGCVVEQ GSCQSETMQV IKEEVDLVEM  360
VAASQEGTGQ E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A2e-20118170153MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A2e-20118170153MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796038.11e-117transcription factor MYB41-like
TrEMBLA0A1E5V2V31e-121A0A1E5V2V3_9POAL; Transcription factor MYB98
STRINGPavir.J02497.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.14e-24myb domain protein 98